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MK580972.1__QBP06233.1__X__00037

Bact-Vir

MK580972.1__QBP06233.1__X__00037

Identity

Accession:
MK580972 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_phage_YB07

TaxID: 2555548

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
Domain cluster: rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.91 83.0 8.42e-01 98.7% 98.7%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.36e-01 88.5% 84.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 46.0 4.49e-01 84.6% 65.1%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.05e-01 84.6% 80.8%
1wbaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 48.0 3.72e-01 82.1% 91.8%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 31.0 3.42e-01 78.2% 62.1%
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 43.0 3.39e-01 83.3% 91.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 39.0 4.29e-01 92.3% 98.3%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 42.0 3.32e-01 83.3% 97.6%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 39.0 3.21e-01 78.2% 74.5%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 36.0 3.81e-01 88.5% 81.4%
3k50A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 35.0 3.33e-01 71.8% 74.0%
2gzbB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 39.0 3.15e-01 83.3% 90.8%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.51 45.0 3.38e-01 100.0% 96.4%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.62e-01 83.3% 68.9%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.50 43.0 4.23e-01 100.0% 95.5%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.50 31.0 2.86e-01 70.5% 48.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.90 81.0 8.13e-01 100.0% 94.9%
3172870 4.1.1.67 ↗ beta barrels › SH3 › SH3 › SH3 › FDF 0.73 49.0 4.61e-01 87.2% 56.8%
2632533 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.73 54.0 5.73e-01 84.6% 88.4%
3483309 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 4.82e-01 89.7% 53.6%
5044296 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.59e-01 87.2% 83.3%
3701868 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.66 52.0 4.94e-01 91.0% 72.2%
4182769 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.63 37.0 4.13e-01 100.0% 75.0%
3618787 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 43.0 3.87e-01 83.3% 51.8%
4024090 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 49.0 4.68e-01 89.7% 73.3%
3250542 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.61 47.0 4.33e-01 83.3% 76.0%
3335348 6.1.1.2 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume 0.59 45.0 3.42e-01 82.1% 82.8%
4002697 5090.2.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain 0.58 40.0 3.17e-01 73.1% 61.1%
4339993 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.57 43.0 4.13e-01 100.0% 70.0%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.56 42.0 4.25e-01 100.0% 80.0%
3801000 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 3.91e-01 97.4% 92.9%
3965860 3523.1.1.1 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.56 42.0 3.93e-01 83.3% 89.0%
3581490 2.1.1.72 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC 0.55 48.0 3.82e-01 97.4% 90.0%
3839369 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.55 41.0 4.13e-01 98.7% 78.8%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.55 40.0 4.08e-01 100.0% 81.3%
3966547 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.55 41.0 3.86e-01 83.3% 90.0%
4659012 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.55 42.0 3.52e-01 85.9% 68.3%
3164479 3523.1.1.1 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.54 41.0 3.88e-01 83.3% 96.8%
3796321 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.53 41.0 3.39e-01 84.6% 54.7%
3708284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.73e-01 79.5% 94.4%
3726095 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.57e-01 85.9% 79.1%
3611326 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 37.0 2.30e-01 78.2% 47.3%
3253023 708.1.2.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP 0.51 39.0 3.18e-01 84.6% 100.0%