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MK580972.1__QBP06236.1__X__00040

Bact-Vir

MK580972.1__QBP06236.1__X__00040

Identity

Accession:
MK580972 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_phage_YB07

TaxID: 2555548

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: rep: MN270266.1__QGJ85858.1__X__00053__D136-224
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.77e-01 100.0% 87.0%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.23e-01 100.0% 80.5%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.70e-01 94.7% 73.2%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.92e-01 93.4% 98.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.97e-01 89.5% 100.0%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.66 40.0 3.85e-01 100.0% 52.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 41.0 4.74e-01 89.5% 94.2%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.65 52.0 3.81e-01 97.4% 33.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 42.0 4.84e-01 88.2% 100.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.78e-01 86.8% 100.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.63 44.0 4.20e-01 100.0% 61.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 39.0 4.55e-01 76.3% 100.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.67e-01 89.5% 98.1%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.72e-01 98.7% 66.7%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.28e-01 97.4% 63.5%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.84e-01 80.3% 100.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.81e-01 86.8% 96.7%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.71e-01 78.9% 100.0%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.55e-01 82.9% 85.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.60e-01 82.9% 91.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.48e-01 86.8% 90.6%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.54e-01 94.7% 93.8%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.71e-01 82.9% 98.4%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.60e-01 81.6% 100.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 46.0 4.68e-01 100.0% 95.8%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.57 42.0 4.21e-01 78.9% 100.0%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.31e-01 89.5% 80.5%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.55 41.0 3.53e-01 80.3% 65.3%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 3.88e-01 97.4% 61.1%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.54 46.0 3.34e-01 100.0% 32.9%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.16e-01 85.5% 87.1%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.34e-01 93.4% 90.3%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 4.38e-01 89.5% 93.4%
1cyyA02 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.53 41.0 3.53e-01 82.9% 94.4%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 41.0 3.83e-01 82.9% 97.9%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.22e-01 92.1% 43.5%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.73e-01 98.7% 59.6%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 38.0 2.75e-01 100.0% 25.2%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 35.0 2.91e-01 100.0% 36.8%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 3.92e-01 96.1% 85.5%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 44.0 3.42e-01 100.0% 46.8%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 2.99e-01 92.1% 36.9%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.51 44.0 3.18e-01 100.0% 73.8%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.50 36.0 3.88e-01 82.9% 90.8%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.50 38.0 3.14e-01 81.6% 92.2%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 37.0 3.11e-01 80.3% 75.7%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.83 68.0 6.71e-01 100.0% 82.5%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.82 67.0 6.30e-01 97.4% 73.3%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.80 69.0 6.22e-01 100.0% 70.0%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.80 66.0 6.42e-01 97.4% 80.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.79 67.0 6.37e-01 100.0% 77.8%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.79 68.0 6.27e-01 100.0% 74.7%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.79 68.0 6.15e-01 100.0% 71.0%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.78 63.0 6.60e-01 97.4% 95.6%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 55.0 5.86e-01 98.7% 89.2%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.74 62.0 5.48e-01 100.0% 64.8%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.71 48.0 3.72e-01 100.0% 32.1%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.90e-01 97.4% 90.5%
4422325 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.81e-01 98.7% 91.0%
3584364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 5.01e-01 86.8% 98.0%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.93e-01 98.7% 93.8%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 60.0 5.85e-01 100.0% 89.4%
5080798 4.17.1.0 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.67 54.0 5.48e-01 92.1% 88.0%
3475965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 40.0 4.75e-01 88.2% 100.0%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 59.0 5.82e-01 98.7% 95.0%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 45.0 5.09e-01 85.5% 100.0%
2469820 219.1.1.49 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C70 0.65 58.0 4.57e-01 100.0% 48.7%
3898672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.63e-01 75.0% 81.5%
3925803 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 56.0 4.93e-01 97.4% 79.1%
3971321 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.63 50.0 5.22e-01 100.0% 94.2%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 5.15e-01 100.0% 98.5%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 52.0 5.18e-01 100.0% 88.7%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.00e-01 94.7% 95.4%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 40.0 4.53e-01 88.2% 92.6%
3940233 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.86e-01 100.0% 70.0%
3505437 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 46.0 4.43e-01 88.2% 70.6%
3593222 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.31e-01 98.7% 96.3%
3481726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.81e-01 76.3% 95.0%
3523802 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.66e-01 86.8% 93.3%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.61 43.0 4.45e-01 84.2% 80.0%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 42.0 4.18e-01 77.6% 68.8%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 48.0 4.63e-01 100.0% 75.6%
3787905 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 44.0 4.54e-01 77.6% 84.3%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 44.0 4.82e-01 86.8% 100.0%
3538030 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 47.0 4.91e-01 97.4% 94.3%
3912956 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.60 46.0 4.04e-01 93.4% 54.2%
3763497 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 47.0 4.73e-01 85.5% 90.7%
513 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 46.0 4.79e-01 85.5% 97.1%
3879172 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 44.0 4.67e-01 85.5% 95.4%
3181191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.39e-01 100.0% 64.3%
3890893 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 40.0 4.53e-01 75.0% 100.0%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.57 41.0 3.72e-01 81.6% 53.6%
3550248 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 41.0 3.81e-01 92.1% 59.0%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 45.0 4.23e-01 97.4% 70.5%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.56 48.0 4.64e-01 100.0% 85.9%
3423334 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.56 44.0 3.72e-01 93.4% 50.8%
3497168 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.55 42.0 3.81e-01 97.4% 58.2%
3612351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.50e-01 89.5% 97.3%
3524130 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.55 43.0 3.83e-01 97.4% 59.1%
3463688 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.55 43.0 3.13e-01 97.4% 29.3%
3770399 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.55 43.0 3.87e-01 98.7% 60.0%
145843 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.55 43.0 3.88e-01 97.4% 61.1%
3897602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.21e-01 97.4% 73.7%
3404158 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.54 41.0 3.64e-01 92.1% 54.8%
1063821 3707.1.1.1 ↗ a+b two layers › SdbC C-terminal domain › SdbC C-terminal domain › SdbC C-terminal domain › SdbC_C 0.54 33.0 3.54e-01 82.9% 74.2%
3272021 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.54 43.0 3.41e-01 92.1% 90.3%
3184022 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 46.0 3.91e-01 98.7% 98.5%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.53 46.0 3.22e-01 100.0% 57.8%
4980573 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 40.0 3.06e-01 82.9% 34.7%
3908017 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.52 42.0 4.18e-01 100.0% 86.3%
3937478 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 44.0 3.99e-01 100.0% 83.6%
5028702 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 38.0 3.15e-01 80.3% 76.4%
4952063 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.50 43.0 3.64e-01 98.7% 77.8%