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MK580972.1__QBP06298.1__X__00102
Bact-VirMK580972.1__QBP06298.1__X__00102
Identity
- Accession:
- MK580972 ↗
- Kingdom:
- phage
Quality
76.4
mean pLDDT
Taxonomy
TaxID: 2555548
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-71
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.71 | 50.0 | 5.13e-01 | 86.3% | 78.0% |
| 1miwA03 | 1.20.58.560 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 52.0 | 4.27e-01 | 100.0% | 45.0% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.66 | 50.0 | 4.20e-01 | 88.2% | 99.0% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.65 | 56.0 | 4.30e-01 | 96.1% | 62.6% |
| 2yjgA01 | 3.90.226.30 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain | 0.63 | 46.0 | 3.26e-01 | 90.2% | 23.2% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.62 | 53.0 | 4.56e-01 | 100.0% | 81.6% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.62 | 54.0 | 4.55e-01 | 100.0% | 77.5% |
| 1ugoA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.60 | 52.0 | 4.21e-01 | 100.0% | 73.7% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.60 | 52.0 | 4.22e-01 | 100.0% | 61.6% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.57 | 46.0 | 4.23e-01 | 98.0% | 73.3% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.57 | 46.0 | 3.24e-01 | 98.0% | 50.8% |
| 3icxA02 | 1.10.150.460 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.57 | 42.0 | 4.18e-01 | 82.4% | 88.5% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.56 | 46.0 | 4.40e-01 | 96.1% | 83.6% |
| 2p67A01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 44.0 | 4.47e-01 | 100.0% | 94.2% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.55 | 44.0 | 3.86e-01 | 98.0% | 56.8% |
| 1r69A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 36.0 | 3.44e-01 | 80.4% | 57.1% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.52 | 44.0 | 4.24e-01 | 100.0% | 82.0% |
| 1v9dB00 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.52 | 40.0 | 2.63e-01 | 100.0% | 68.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001590 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 57.0 | 5.60e-01 | 88.2% | 85.5% |
| 3257722 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.71 | 56.0 | 4.82e-01 | 90.2% | 63.5% |
| 3773905 | 604.3.1.33 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › RSLD_CPSF6 | 0.71 | 63.0 | 5.52e-01 | 100.0% | 85.3% |
| 4979555 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.68 | 54.0 | 5.19e-01 | 90.2% | 83.3% |
| 5026703 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.68 | 54.0 | 3.24e-01 | 88.2% | 14.0% |
| 5058493 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.67 | 55.0 | 3.30e-01 | 92.2% | 13.5% |
| 3744146 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.66 | 58.0 | 4.83e-01 | 100.0% | 86.7% |
| 5050625 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 53.0 | 3.91e-01 | 98.0% | 81.9% |
| 3965181 | 618.1.1.2 ↗ | a+b complex topology › DNA mimic protein DMP12-like › DNA mimic protein DMP12-related › DNA mimic protein DMP12-related › DMP12 | 0.65 | 56.0 | 4.35e-01 | 96.1% | 57.5% |
| 4995777 | 101.42.1.0 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins | 0.65 | 52.0 | 5.10e-01 | 90.2% | 94.5% |
| 3574981 | 604.12.1.91 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › RSLD_CPSF6 | 0.65 | 56.0 | 5.04e-01 | 96.1% | 88.6% |
| 3229748 | 1134.1.1.9 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 | 0.65 | 58.0 | 4.88e-01 | 100.0% | 75.3% |
| 4287137 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.64 | 52.0 | 4.44e-01 | 94.1% | 80.0% |
| 3818805 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.63 | 51.0 | 4.86e-01 | 98.0% | 86.2% |
| 3924801 | 109.4.1.1643 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 | 0.63 | 56.0 | 4.57e-01 | 100.0% | 67.4% |
| 3904075 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 52.0 | 4.14e-01 | 98.0% | 84.5% |
| 3739480 | 109.4.1.332 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mtf2 | 0.62 | 51.0 | 3.64e-01 | 100.0% | 56.0% |
| 3194631 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 45.0 | 4.05e-01 | 84.3% | 82.7% |
| 3786750 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.59 | 48.0 | 4.00e-01 | 100.0% | 76.0% |
| 3566807 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.59 | 46.0 | 4.42e-01 | 88.2% | 83.3% |
| 143586 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.57 | 46.0 | 4.23e-01 | 98.0% | 73.3% |
| 3324255 | 109.4.1.447 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4K_N | 0.57 | 46.0 | 2.81e-01 | 100.0% | 21.0% |
| 3177431 | 101.1.1.94 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Reb1_MybAD | 0.55 | 44.0 | 4.02e-01 | 92.2% | 92.9% |
| 4229998 | 109.28.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › EssB extracellular domain › EssB extracellular domain › YukC | 0.52 | 43.0 | 3.29e-01 | 100.0% | 52.6% |
| 4964308 | 101.1.4.94 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HVO_2718 | 0.52 | 37.0 | 3.51e-01 | 78.4% | 70.8% |