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MK580972.1__QBP06339.1__X__00143

Bact-Vir

MK580972.1__QBP06339.1__X__00143

Identity

Accession:
MK580972 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_phage_YB07

TaxID: 2555548

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-100
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.33e-01 75.4% 90.3%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.18e-01 81.5% 96.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.50e-01 81.5% 92.4%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.51e-01 81.5% 92.4%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 56.0 5.24e-01 84.6% 100.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.49e-01 78.5% 90.0%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.13e-01 81.5% 100.0%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.71 55.0 4.94e-01 86.2% 82.8%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 4.94e-01 81.5% 79.5%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.41e-01 72.3% 100.0%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.70 54.0 4.66e-01 83.1% 56.4%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 4.64e-01 83.1% 72.0%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.21e-01 81.5% 98.5%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.42e-01 81.5% 96.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.69 51.0 5.33e-01 80.0% 100.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 4.93e-01 92.3% 67.6%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.66 50.0 4.16e-01 83.1% 47.9%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 46.0 3.60e-01 75.4% 63.1%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 3.72e-01 75.4% 73.0%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 42.0 4.07e-01 70.8% 81.6%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 49.0 3.57e-01 90.8% 48.5%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.62 47.0 4.04e-01 92.3% 49.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.83e-01 89.2% 89.9%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 45.0 3.55e-01 80.0% 95.1%
1zyiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.67e-01 76.9% 85.3%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.06e-01 70.8% 86.8%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 48.0 4.76e-01 93.8% 100.0%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.39e-01 75.4% 100.0%
3vkwA01 3.30.450.420 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 51.0 3.93e-01 100.0% 44.0%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 45.0 3.27e-01 89.2% 49.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.65e-01 87.7% 100.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.57 45.0 4.03e-01 90.8% 63.3%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.40e-01 76.9% 68.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.28e-01 81.5% 84.4%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 44.0 3.12e-01 86.2% 76.8%
1vf7F01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 43.0 3.79e-01 87.7% 99.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 44.0 3.25e-01 92.3% 50.5%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.44e-01 78.5% 75.5%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 39.0 3.25e-01 80.0% 73.9%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.53 40.0 3.39e-01 84.6% 88.0%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 40.0 3.06e-01 83.1% 35.5%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 41.0 2.70e-01 89.2% 48.7%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.21e-01 81.5% 77.4%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.49e-01 73.8% 82.4%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 2.76e-01 83.1% 29.3%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 2.98e-01 83.1% 72.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.25e-01 80.0% 68.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.15e-01 83.1% 75.0%
4byfC02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 38.0 2.88e-01 83.1% 39.1%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 6.18e-01 87.7% 100.0%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.09e-01 73.8% 91.4%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.74 56.0 5.23e-01 81.5% 77.5%
4953913 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.73 55.0 5.67e-01 80.0% 93.3%
4123180 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.73 56.0 5.33e-01 81.5% 81.3%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.73 60.0 5.35e-01 92.3% 75.8%
4658938 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.73 56.0 5.04e-01 83.1% 70.0%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.64e-01 78.5% 100.0%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 59.0 5.15e-01 92.3% 73.0%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.72 54.0 5.58e-01 81.5% 98.4%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.37e-01 80.0% 86.2%
197051 4.1.1.74 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3247 0.71 55.0 4.94e-01 86.2% 82.8%
3971321 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 59.0 5.80e-01 92.3% 100.0%
4163851 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 56.0 5.85e-01 87.7% 98.3%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.47e-01 84.6% 100.0%
139950 4.1.1.126 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5608 0.70 53.0 5.57e-01 81.5% 100.0%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 3.49e-01 86.2% 31.4%
4451993 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 57.0 5.96e-01 90.8% 100.0%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.10e-01 80.0% 82.9%
5045214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.45e-01 87.7% 100.0%
3712219 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.69 52.0 5.21e-01 81.5% 95.4%
5040888 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.69 54.0 5.11e-01 86.2% 88.7%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 54.0 5.47e-01 86.2% 100.0%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 51.0 3.90e-01 80.0% 35.5%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.52e-01 81.5% 100.0%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 54.0 5.43e-01 87.7% 100.0%
4969566 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.68 51.0 4.81e-01 81.5% 90.0%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 56.0 5.46e-01 92.3% 90.4%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 57.0 5.13e-01 93.8% 78.9%
5013683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.22e-01 80.0% 91.7%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 54.0 5.48e-01 89.2% 98.5%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 56.0 5.59e-01 93.8% 97.1%
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.22e-01 78.5% 98.2%
4975764 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.67 55.0 5.43e-01 90.8% 92.9%
4104821 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 56.0 5.39e-01 93.8% 90.7%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.67 48.0 4.77e-01 76.9% 75.7%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 5.06e-01 72.3% 94.0%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 55.0 5.46e-01 93.8% 97.1%
4216845 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 55.0 5.35e-01 92.3% 90.4%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 55.0 5.55e-01 92.3% 100.0%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.42e-01 93.8% 95.7%
4286562 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 55.0 5.55e-01 92.3% 100.0%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 56.0 5.58e-01 96.9% 97.1%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 54.0 5.49e-01 92.3% 100.0%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.66 51.0 5.27e-01 84.6% 100.0%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 54.0 5.30e-01 93.8% 91.8%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.65 49.0 5.03e-01 83.1% 86.7%
3226399 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.65 51.0 4.84e-01 87.7% 81.2%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 54.0 5.28e-01 92.3% 97.1%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 53.0 5.50e-01 90.8% 100.0%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.26e-01 89.2% 93.7%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 53.0 5.22e-01 93.8% 95.7%
4264671 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 56.0 5.27e-01 100.0% 93.8%
3226400 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.64 50.0 4.58e-01 87.7% 75.6%
4212091 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 54.0 5.48e-01 95.4% 100.0%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.63 50.0 5.02e-01 92.3% 89.2%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.16e-01 98.5% 96.0%
4973749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 5.04e-01 92.3% 95.7%
4151014 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 51.0 5.25e-01 92.3% 100.0%
3517377 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 52.0 4.87e-01 100.0% 78.8%
5057445 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.61 45.0 4.25e-01 83.1% 64.7%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.72e-01 87.7% 95.4%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.64e-01 84.6% 100.0%
3502336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 43.0 3.84e-01 80.0% 85.0%
5054738 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.38e-01 75.4% 89.1%
3933572 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.54e-01 92.3% 64.3%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.58 45.0 4.28e-01 89.2% 82.5%
933 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.57 40.0 3.40e-01 76.9% 68.9%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 47.0 4.36e-01 100.0% 75.6%
3623434 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.55 40.0 3.33e-01 80.0% 71.5%
7384 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.55 44.0 3.25e-01 92.3% 50.5%
4988664 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.72e-01 76.9% 97.3%
1924009 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.52 39.0 3.14e-01 81.5% 69.9%
3708577 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 43.0 3.43e-01 100.0% 68.3%