←Back to structures
MK580972.1__QBP06365.1__X__00169
Bact-VirMK580972.1__QBP06365.1__X__00169
Identity
- Accession:
- MK580972 ↗
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Taxonomy
TaxID: 2555548
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 131-226
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 60.0 | 6.19e-01 | 100.0% | 89.1% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 63.0 | 6.01e-01 | 100.0% | 78.0% |
| 4f2eA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.58 | 44.0 | 4.42e-01 | 90.6% | 78.6% |
| 4eogA01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.57 | 45.0 | 3.22e-01 | 85.4% | 76.2% |
| 4kreA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 41.0 | 3.09e-01 | 77.1% | 70.0% |
| 1yezA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 34.0 | 3.86e-01 | 70.8% | 88.2% |
| 2w0mA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 3.11e-01 | 79.2% | 62.3% |
| 2exdA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 32.0 | 3.59e-01 | 70.8% | 78.4% |
| 4aq1A04 | 2.60.40.3450 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 38.0 | 3.54e-01 | 77.1% | 73.2% |
| 2k5hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 32.0 | 3.62e-01 | 70.8% | 82.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581339 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.76 | 62.0 | 6.28e-01 | 100.0% | 88.3% |
| 185692 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.75 | 63.0 | 6.01e-01 | 100.0% | 78.0% |
| 3908713 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.62 | 36.0 | 4.26e-01 | 90.6% | 88.3% |
| 4028092 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.60 | 34.0 | 4.08e-01 | 87.5% | 92.7% |
| 3982197 | 207.2.1.25 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA | 0.57 | 44.0 | 2.91e-01 | 99.0% | 19.4% |
| 3780453 | 10.32.1.41 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 | 0.57 | 48.0 | 4.37e-01 | 96.9% | 71.1% |
| 4286724 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.56 | 50.0 | 3.62e-01 | 100.0% | 57.7% |
| 3874373 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 47.0 | 4.25e-01 | 96.9% | 71.9% |
| 3741404 | 325.1.8.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › Rrp40_N | 0.53 | 31.0 | 3.65e-01 | 85.4% | 90.0% |
| 5043453 | 2004.1.1.94 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 | 0.53 | 39.0 | 3.24e-01 | 79.2% | 90.3% |
| 3169438 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 37.0 | 3.88e-01 | 100.0% | 81.1% |
| 3578306 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 32.0 | 3.57e-01 | 89.6% | 80.0% |
| 5081375 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.51 | 34.0 | 3.84e-01 | 72.9% | 92.9% |
| 5071470 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.51 | 33.0 | 3.70e-01 | 70.8% | 88.6% |
| 5027166 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.51 | 33.0 | 3.71e-01 | 71.9% | 86.5% |
| 3696527 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.51 | 47.0 | 3.23e-01 | 100.0% | 36.5% |
| 3944705 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.51 | 33.0 | 3.68e-01 | 71.9% | 85.3% |
| 3244961 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 35.0 | 3.73e-01 | 97.9% | 82.4% |
D2
medium
residues 89-120
Domain cluster:
representative