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MK580972.1__QBP06421.1__X__00225

Bact-Vir

MK580972.1__QBP06421.1__X__00225

Identity

Accession:
MK580972 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_phage_YB07

TaxID: 2555548

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: rep: MH059633.1__AWD92455.1__X__00060__D38-90
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b25A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.73 53.0 5.56e-01 100.0% 86.0%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.71 56.0 5.89e-01 100.0% 96.5%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.70 56.0 5.61e-01 100.0% 85.9%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.70 54.0 5.55e-01 100.0% 87.1%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.70 55.0 5.34e-01 100.0% 76.4%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 52.0 4.22e-01 89.1% 76.4%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.22e-01 96.9% 64.0%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.15e-01 96.9% 63.9%
1udxA03 3.30.300.350 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › GTP-binding protein OBG, C-terminal domain 0.57 38.0 3.65e-01 90.6% 59.5%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.55 37.0 3.67e-01 96.9% 64.3%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.04e-01 96.9% 71.6%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.54 33.0 3.45e-01 100.0% 63.9%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.54 40.0 3.76e-01 95.3% 65.4%
1u6mA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.06e-01 92.2% 56.1%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.51 38.0 3.61e-01 95.3% 66.3%
5adxJ01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 44.0 3.95e-01 100.0% 80.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
139162 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.70 54.0 5.58e-01 100.0% 88.5%
1030895 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.70 55.0 5.45e-01 100.0% 80.9%
5003403 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.70 57.0 5.69e-01 100.0% 87.7%
4991109 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.69 54.0 5.58e-01 100.0% 91.7%
4942336 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.69 52.0 5.38e-01 100.0% 86.7%
5047456 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.68 54.0 5.59e-01 100.0% 91.7%
5059211 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.67 51.0 5.24e-01 100.0% 88.3%
4004621 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 37.0 4.01e-01 96.9% 69.1%
3785319 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.59 53.0 4.84e-01 100.0% 94.1%
3729312 9.14.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.59 51.0 4.33e-01 100.0% 98.2%
3592082 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.53e-01 100.0% 80.0%
4952713 284.1.2.0 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.56 47.0 4.12e-01 100.0% 98.1%
3732272 101.1.2.503 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25875 0.55 39.0 3.82e-01 75.0% 85.7%
3221396 101.1.2.118 ↗ alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.55 42.0 4.31e-01 92.2% 85.7%
4015092 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.94e-01 89.1% 71.4%
4152826 310.1.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.53 37.0 3.28e-01 76.6% 83.8%
3304324 101.1.2.106 ↗ alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.52 41.0 3.26e-01 87.5% 60.0%
3741091 101.1.2.69 ↗ alpha arrays › HTH › HTH › winged helix domain › La 0.52 44.0 3.92e-01 95.3% 73.7%
3970005 246.1.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase 0.52 38.0 2.63e-01 82.8% 68.5%
4432407 101.1.2.137 ↗ alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.51 37.0 3.42e-01 95.3% 56.7%
3595771 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.50 35.0 3.64e-01 92.2% 80.0%
3831826 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.50 36.0 3.41e-01 78.1% 78.8%
4012882 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 3.68e-01 96.9% 70.0%