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MK580972.1__QBP06434.1__X__00238

Bact-Vir

MK580972.1__QBP06434.1__X__00238

Identity

Accession:
MK580972 ↗
Kingdom:
phage

Quality

70.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Menderavirus› Stenotrophomonas_phage_YB07

TaxID: 2555548

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-107
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 59.0 4.46e-01 96.0% 66.9%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.58 46.0 4.00e-01 92.0% 73.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3368713 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.54 37.0 3.26e-01 74.0% 56.0%
3687943 304.112.1.3 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN 0.52 35.0 2.86e-01 70.0% 70.5%
3682974 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.51 36.0 2.35e-01 76.0% 17.3%
5059354 2492.1.1.61 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MOFRL 0.51 46.0 3.34e-01 100.0% 51.5%
4969054 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.51 35.0 3.17e-01 76.0% 54.7%