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MK580972.1__QBP06441.1__X__00245
Bact-VirMK580972.1__QBP06441.1__X__00245
Identity
- Accession:
- MK580972 ↗
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Taxonomy
TaxID: 2555548
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4j31A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.72 | 63.0 | 3.78e-01 | 100.0% | 75.4% |
| 1xfjA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.65 | 49.0 | 3.19e-01 | 86.8% | 17.6% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 45.0 | 3.65e-01 | 75.5% | 88.3% |
| 2dkhA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 56.0 | 3.58e-01 | 100.0% | 66.9% |
| 4c98A01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 51.0 | 4.22e-01 | 96.2% | 70.5% |
| 1rv9A00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.63 | 47.0 | 3.05e-01 | 92.5% | 17.8% |
| 3mpxA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 44.0 | 3.63e-01 | 75.5% | 88.7% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.62 | 50.0 | 3.54e-01 | 96.2% | 38.3% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 50.0 | 4.61e-01 | 100.0% | 72.1% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 50.0 | 4.36e-01 | 100.0% | 61.0% |
| 3g5sA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 49.0 | 3.19e-01 | 100.0% | 53.2% |
| 4gzuB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 41.0 | 3.56e-01 | 75.5% | 96.7% |
| 2i8eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 50.0 | 4.49e-01 | 100.0% | 68.9% |
| 1ivyB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 48.0 | 2.87e-01 | 98.1% | 13.6% |
| 2dgrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 48.0 | 4.57e-01 | 98.1% | 94.0% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.58 | 46.0 | 4.34e-01 | 98.1% | 73.1% |
| 4g08A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.58 | 47.0 | 4.45e-01 | 100.0% | 81.4% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.58 | 45.0 | 3.27e-01 | 94.3% | 37.6% |
| 1rp5A03 | 3.30.70.2110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 49.0 | 4.20e-01 | 100.0% | 86.7% |
| 4r2bA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 48.0 | 3.34e-01 | 100.0% | 71.6% |
| 3ui3A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 48.0 | 4.01e-01 | 100.0% | 65.3% |
| 1b4bA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.56 | 46.0 | 4.31e-01 | 100.0% | 77.5% |
| 3a2vD02 | 3.30.1020.10 | Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 | 0.56 | 41.0 | 3.49e-01 | 83.0% | 85.3% |
| 6h9dA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.56 | 45.0 | 3.38e-01 | 94.3% | 43.2% |
| 3oq2A00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 3.89e-01 | 100.0% | 56.6% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.03e-01 | 100.0% | 69.5% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 46.0 | 3.86e-01 | 100.0% | 63.3% |
| 2kdoA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 3.99e-01 | 98.1% | 75.0% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.54 | 41.0 | 3.14e-01 | 92.5% | 91.2% |
| 1oltA02 | 1.10.10.920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 43.0 | 3.93e-01 | 100.0% | 76.5% |
| 1q16A10 | 1.20.1700.20 | Mainly Alpha › Up-down Bundle › AF1104-like › | 0.53 | 44.0 | 3.86e-01 | 100.0% | 69.7% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 43.0 | 3.71e-01 | 100.0% | 73.4% |
| 3ungC03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 43.0 | 3.35e-01 | 100.0% | 49.6% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 42.0 | 3.70e-01 | 100.0% | 90.6% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.50 | 34.0 | 2.99e-01 | 73.6% | 83.5% |
| 1kblA02 | 1.10.189.10 | Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 | 0.50 | 35.0 | 3.35e-01 | 75.5% | 63.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3338678 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.75 | 67.0 | 3.91e-01 | 100.0% | 66.6% |
| None | — | 0.74 | 64.0 | 4.00e-01 | 100.0% | 56.0% | |
| 3182039 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.72 | 63.0 | 3.84e-01 | 100.0% | 56.5% |
| 3695449 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.70 | 62.0 | 3.85e-01 | 100.0% | 50.2% |
| 4344305 | 2003.1.2.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.70 | 61.0 | 3.73e-01 | 100.0% | 54.6% |
| 3697297 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.69 | 57.0 | 4.41e-01 | 100.0% | 50.4% |
| 3885541 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.69 | 58.0 | 5.50e-01 | 100.0% | 93.8% |
| None | — | 0.69 | 59.0 | 3.49e-01 | 100.0% | 65.3% | |
| 4984494 | 304.48.1.31 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Cas10-Cmr2_palm2 | 0.67 | 60.0 | 3.74e-01 | 100.0% | 77.9% |
| 3207062 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.67 | 58.0 | 3.63e-01 | 100.0% | 50.0% |
| 4390095 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.66 | 57.0 | 3.70e-01 | 100.0% | 60.0% |
| 4997766 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.65 | 53.0 | 4.42e-01 | 100.0% | 65.7% |
| 5046263 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.64 | 49.0 | 3.05e-01 | 94.3% | 14.0% |
| 4565839 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.63 | 47.0 | 4.64e-01 | 100.0% | 75.0% |
| 4025596 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.61 | 50.0 | 4.92e-01 | 98.1% | 98.3% |
| 4943447 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.61 | 51.0 | 4.68e-01 | 100.0% | 73.3% |
| 4426624 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.61 | 51.0 | 4.36e-01 | 100.0% | 58.8% |
| 4381216 | 244.1.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GIDA | 0.60 | 50.0 | 3.23e-01 | 100.0% | 62.8% |
| 4467547 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 46.0 | 4.47e-01 | 100.0% | 75.4% |
| 3285236 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.60 | 48.0 | 4.69e-01 | 98.1% | 85.0% |
| 4260605 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.60 | 50.0 | 4.16e-01 | 100.0% | 53.8% |
| 4597942 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.60 | 48.0 | 3.17e-01 | 100.0% | 62.3% |
| 4170381 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.59 | 50.0 | 4.14e-01 | 100.0% | 53.2% |
| 3437099 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.59 | 51.0 | 4.29e-01 | 100.0% | 71.3% |
| 4514234 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.59 | 49.0 | 4.13e-01 | 100.0% | 55.6% |
| 4123628 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.59 | 48.0 | 4.28e-01 | 100.0% | 62.5% |
| 3440856 | 4307.1.1.0 ↗ | alpha duplicates or obligate multimers › EB1 dimerisation domain-like › EB1 dimerisation domain-like › EB1 dimerisation domain-like | 0.59 | 42.0 | 3.80e-01 | 77.4% | 54.7% |
| 3939861 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.58 | 49.0 | 3.88e-01 | 100.0% | 62.5% |
| 3922862 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.58 | 48.0 | 3.78e-01 | 100.0% | 56.0% |
| 4414821 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.57 | 50.0 | 4.16e-01 | 100.0% | 58.5% |
| 5082143 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.57 | 48.0 | 3.95e-01 | 100.0% | 58.1% |
| 4519317 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.57 | 50.0 | 4.28e-01 | 100.0% | 64.7% |
| 4316258 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.57 | 50.0 | 4.28e-01 | 100.0% | 63.5% |
| 4400525 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.56 | 49.0 | 4.13e-01 | 100.0% | 61.1% |
| 3953647 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.56 | 49.0 | 4.06e-01 | 100.0% | 64.2% |
| 4611550 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.56 | 45.0 | 3.75e-01 | 100.0% | 50.0% |
| 408591 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.55 | 46.0 | 3.85e-01 | 100.0% | 54.9% |
| 3271984 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.55 | 44.0 | 3.35e-01 | 94.3% | 80.7% |
| 5007807 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.55 | 45.0 | 3.88e-01 | 100.0% | 65.3% |
| 5069565 | 304.26.1.0 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like | 0.54 | 46.0 | 3.86e-01 | 100.0% | 64.2% |
| 5059195 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 42.0 | 4.18e-01 | 100.0% | 95.0% |
| 3235973 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 44.0 | 3.78e-01 | 94.3% | 77.6% |
| 4938397 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.52 | 42.0 | 3.89e-01 | 100.0% | 72.0% |
| 3857980 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.50 | 41.0 | 3.35e-01 | 96.2% | 86.2% |