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MK599315.1__QBX32149.1__X__00002

Bact-Vir

MK599315.1__QBX32149.1__X__00002

Identity

Accession:
MK599315 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_PA1C

TaxID: 2562177

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-57
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 48.0 3.67e-01 77.1% 84.8%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 53.0 3.15e-01 89.6% 32.7%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 46.0 3.54e-01 77.1% 69.3%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.64 50.0 3.71e-01 87.5% 53.5%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.63 50.0 3.74e-01 89.6% 54.0%
3k3dA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 44.0 3.34e-01 77.1% 73.0%
2hzlB01 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.61 46.0 3.03e-01 83.3% 61.5%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 43.0 3.33e-01 77.1% 83.8%
2yjgA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.60 45.0 2.88e-01 81.2% 91.4%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.59 46.0 3.34e-01 87.5% 38.5%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 42.0 3.27e-01 77.1% 79.8%
2dhgA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 42.0 3.57e-01 77.1% 60.8%
4petA01 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.58 42.0 2.86e-01 83.3% 62.3%
2kb3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 39.0 3.03e-01 75.0% 75.8%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.54 38.0 3.89e-01 85.4% 76.1%
1ujcA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 42.0 3.10e-01 95.8% 48.7%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.49e-01 87.5% 23.0%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.53 35.0 3.66e-01 89.6% 80.5%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.52 40.0 3.14e-01 85.4% 79.8%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.42e-01 91.7% 82.4%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.31e-01 87.5% 52.8%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 2.77e-01 97.9% 64.2%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.51 42.0 3.44e-01 97.9% 92.9%
4x28C02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.50 35.0 2.88e-01 77.1% 82.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940104 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.68 43.0 3.38e-01 93.8% 30.0%
4945661 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.67 47.0 3.00e-01 72.9% 98.3%
5083856 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.65 46.0 3.53e-01 77.1% 73.9%
4980668 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 46.0 2.85e-01 77.1% 32.0%
3968498 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 45.0 3.20e-01 75.0% 65.3%
2154862 2498.1.1.23 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.61 50.0 2.79e-01 91.7% 14.5%
3191106 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 42.0 2.89e-01 77.1% 51.6%
5049701 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.59 45.0 2.97e-01 83.3% 74.0%
3839839 4.1.1.84 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_7 0.57 41.0 3.48e-01 79.2% 50.0%
5056735 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 44.0 2.90e-01 81.2% 73.8%
3708644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 3.61e-01 100.0% 75.7%
3740116 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.55 46.0 3.27e-01 100.0% 83.0%
5006152 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 2.85e-01 79.2% 33.1%
3593722 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 40.0 3.82e-01 83.3% 68.3%
3177112 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 42.0 2.90e-01 100.0% 86.2%
3491785 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 43.0 3.25e-01 87.5% 92.2%
2138587 2498.1.1.23 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.53 43.0 2.46e-01 100.0% 53.9%
2883145 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.53 39.0 3.07e-01 85.4% 59.2%
4032315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.57e-01 95.8% 81.1%
2979124 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.52 40.0 3.07e-01 89.6% 57.4%
3422502 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.52 37.0 3.11e-01 85.4% 44.8%
3555682 109.4.1.1397 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PF29376 0.52 36.0 2.05e-01 75.0% 9.8%
3786183 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.52 42.0 3.17e-01 100.0% 79.3%
4553557 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 39.0 2.96e-01 87.5% 91.5%
3995842 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 36.0 2.50e-01 77.1% 26.8%
3290823 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.51 38.0 3.32e-01 83.3% 94.7%