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MK599315.1__QBX32193.1__X__00046
Bact-VirMK599315.1__QBX32193.1__X__00046
Identity
- Accession:
- MK599315 ↗
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-30
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f92B10 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.79 | 61.0 | 4.06e-01 | 100.0% | 21.0% |
| 1miwA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.73 | 52.0 | 4.09e-01 | 76.7% | 43.8% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.70 | 58.0 | 4.72e-01 | 100.0% | 79.0% |
| 1xzzA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.70 | 56.0 | 3.37e-01 | 96.7% | 13.0% |
| 3cz1A00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.70 | 50.0 | 3.33e-01 | 76.7% | 51.3% |
| 2o4cA03 | 3.30.1370.170 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain | 0.70 | 50.0 | 3.58e-01 | 80.0% | 23.9% |
| 6xu2A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.69 | 56.0 | 3.06e-01 | 100.0% | 12.3% |
| 1bwoA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.69 | 57.0 | 4.13e-01 | 100.0% | 60.0% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.68 | 57.0 | 3.82e-01 | 96.7% | 24.3% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 3.90e-01 | 100.0% | 75.2% |
| 3qxyA02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.68 | 56.0 | 3.54e-01 | 100.0% | 94.0% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 54.0 | 3.71e-01 | 96.7% | 26.2% |
| 2l7kA00 | 1.10.10.1850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like | 0.68 | 52.0 | 4.15e-01 | 100.0% | 52.6% |
| 3mtuE00 | 1.20.5.400 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 51.0 | 4.12e-01 | 96.7% | 40.9% |
| 1g0sA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.67 | 53.0 | 3.32e-01 | 100.0% | 61.2% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.66 | 50.0 | 3.50e-01 | 83.3% | 33.7% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 51.0 | 3.91e-01 | 100.0% | 41.7% |
| 1ym3A00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.66 | 48.0 | 2.97e-01 | 80.0% | 13.5% |
| 2z86D01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.65 | 51.0 | 2.94e-01 | 96.7% | 10.5% |
| 1n8vB00 | 1.10.2080.10 | Mainly Alpha › Orthogonal Bundle › Antennal chemosensory protein a6 › Insect odorant-binding protein A10/Ejaculatory bulb-specific protein 3 | 0.65 | 52.0 | 3.71e-01 | 100.0% | 47.6% |
| 2qtqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 52.0 | 3.29e-01 | 100.0% | 28.9% |
| 2ehgA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.64 | 48.0 | 3.19e-01 | 100.0% | 18.8% |
| 1w36B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 51.0 | 3.09e-01 | 100.0% | 20.6% |
| 2dsjA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.62 | 52.0 | 4.07e-01 | 100.0% | 68.7% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 49.0 | 3.82e-01 | 96.7% | 45.9% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 51.0 | 3.60e-01 | 100.0% | 51.6% |
| 1n00A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.58 | 46.0 | 3.68e-01 | 100.0% | 93.2% |
| 3cbuA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 48.0 | 3.14e-01 | 100.0% | 36.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961521 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.72 | 51.0 | 2.90e-01 | 70.0% | 7.5% |
| 4933493 | 109.47.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical C-terminal domain in magnesium chelatase catalytic subunit › Helical C-terminal domain in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.69 | 57.0 | 3.86e-01 | 100.0% | 43.3% |
| 3576432 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.67 | 54.0 | 3.62e-01 | 96.7% | 23.8% |
| 5055105 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 52.0 | 4.14e-01 | 100.0% | 42.9% |
| 3257339 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.63 | 51.0 | 3.48e-01 | 100.0% | 41.6% |
| 4134779 | 2007.2.5.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese, Rhodanese_C | 0.62 | 53.0 | 3.19e-01 | 96.7% | 19.5% |
| 3422206 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.58 | 49.0 | 2.92e-01 | 100.0% | 94.0% |