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MK599315.1__QBX32222.1__X__00075

Bact-Vir

MK599315.1__QBX32222.1__X__00075

Identity

Accession:
MK599315 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_PA1C

TaxID: 2562177

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-111
PDB
Domain cluster: rep: IMGVR_UViG_3300028677_000685-3300028677-Ga0255346_10043513__D4-87
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.75 46.0 5.63e-01 97.8% 100.0%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.68 54.0 5.73e-01 97.8% 100.0%
1d1rA00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.67 53.0 5.54e-01 100.0% 95.2%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.64 41.0 4.58e-01 73.1% 83.3%
4gvbA00 3.30.70.440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit 0.63 43.0 4.68e-01 89.2% 85.7%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.62 43.0 3.70e-01 89.2% 45.9%
1hi9A02 3.30.1360.130 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein 0.61 44.0 4.81e-01 91.4% 94.7%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 44.0 4.75e-01 90.3% 97.3%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.60 53.0 4.69e-01 97.8% 95.5%
7ykvB02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.60 46.0 4.52e-01 90.3% 76.2%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.59 36.0 3.93e-01 73.1% 73.4%
2jtvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 34.0 3.87e-01 78.5% 80.0%
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 45.0 4.36e-01 91.4% 75.7%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.57 40.0 4.42e-01 90.3% 94.5%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 39.0 4.45e-01 80.6% 100.0%
3i87A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.55 45.0 4.42e-01 87.1% 98.0%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.55 47.0 4.76e-01 98.9% 96.8%
2dvkA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.54 46.0 3.82e-01 94.6% 92.8%
3duzA03 6.10.250.3010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 22.0 2.47e-01 88.2% 41.6%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.53 37.0 3.28e-01 96.8% 50.8%
2gqrA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 38.0 3.71e-01 74.2% 75.0%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 34.0 3.34e-01 97.8% 60.0%
3kreA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 37.0 3.72e-01 74.2% 77.3%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 35.0 3.42e-01 98.9% 61.0%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 37.0 3.47e-01 74.2% 82.0%
5f7pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 34.0 3.12e-01 97.8% 51.2%
1ixcA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 38.0 3.69e-01 78.5% 97.0%
2ougA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.50 40.0 3.49e-01 89.2% 56.7%
6ea2A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.50 45.0 3.56e-01 98.9% 71.1%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3533206 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.79 53.0 6.21e-01 94.6% 98.5%
3470093 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.78 53.0 6.22e-01 93.5% 100.0%
4991995 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.78 51.0 5.98e-01 97.8% 95.4%
4966680 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.78 53.0 6.18e-01 97.8% 100.0%
3409500 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.77 55.0 6.26e-01 96.8% 98.6%
3620127 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.76 55.0 5.89e-01 96.8% 87.5%
4983245 242.2.1.2 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.75 47.0 5.16e-01 97.8% 78.7%
3261672 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.74 63.0 6.46e-01 100.0% 96.7%
4955387 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.74 40.0 5.25e-01 94.6% 100.0%
3252775 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.73 53.0 5.98e-01 95.7% 100.0%
3936152 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.71 52.0 5.47e-01 98.9% 84.7%
2631918 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.70 44.0 5.28e-01 100.0% 100.0%
4929591 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.68 55.0 5.61e-01 98.9% 89.9%
4235437 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.67 55.0 5.52e-01 100.0% 87.4%
4435605 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.67 52.0 5.14e-01 96.8% 78.0%
5048601 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.66 53.0 5.21e-01 98.9% 80.8%
4997133 306.3.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.66 55.0 5.55e-01 100.0% 89.5%
5000243 2004.1.1.120 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.66 58.0 4.16e-01 96.8% 34.0%
3470570 242.3.1.1 ↗ a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.65 49.0 4.59e-01 100.0% 64.3%
4000154 242.3.1.1 ↗ a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.65 50.0 4.55e-01 100.0% 62.5%
3280548 306.6.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.65 49.0 5.22e-01 88.2% 92.5%
4992185 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.64 54.0 5.28e-01 100.0% 86.0%
2631980 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.61 46.0 5.04e-01 100.0% 96.1%
3594308 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.59 53.0 4.74e-01 100.0% 82.3%
5028450 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.59 42.0 4.69e-01 74.2% 100.0%
4946546 304.139.1.3 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 0.59 47.0 3.41e-01 89.2% 87.7%
4434453 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 49.0 3.67e-01 92.5% 58.2%
4127813 327.16.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.56 42.0 4.02e-01 80.6% 89.1%
5039778 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 45.0 4.75e-01 89.2% 100.0%
4344014 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.55 42.0 4.41e-01 92.5% 91.8%
3272032 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.54 43.0 4.43e-01 89.2% 93.3%
3291654 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.53 46.0 3.38e-01 93.5% 90.8%
3644183 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 34.0 3.92e-01 80.6% 93.8%
4014945 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.53 36.0 4.09e-01 100.0% 94.3%
4971136 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.52 37.0 2.63e-01 77.4% 99.7%
3986771 101.1.2.16 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.50 36.0 3.25e-01 75.3% 89.2%