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MK599315.1__QBX32370.1__X__00223

Bact-Vir

MK599315.1__QBX32370.1__X__00223

Identity

Accession:
MK599315 ↗
Kingdom:
phage

Quality

56.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 688-844
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 30.0 3.68e-01 84.1% 86.2%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 46.0 3.41e-01 95.5% 70.3%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 36.0 3.65e-01 100.0% 69.6%
2f2bA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.51 37.0 3.21e-01 73.9% 94.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972885 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.52 41.0 3.47e-01 83.4% 65.3%
5082230 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.51 41.0 3.83e-01 87.3% 95.5%
D2 medium residues 135-215
PDB
D3 medium residues 248-332
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 35.0 3.33e-01 87.1% 48.5%
1vs5D02 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.54 42.0 4.07e-01 82.4% 100.0%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 26.0 2.80e-01 98.8% 51.4%
2rqaA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.51 41.0 3.58e-01 90.6% 79.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517104 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.62 35.0 3.24e-01 87.1% 42.7%
3643546 902.1.1.0 few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.59 20.0 2.99e-01 81.2% 62.9%
3295024 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 24.0 3.29e-01 71.8% 84.2%
3721095 3174.2.1.0 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA 0.54 27.0 3.41e-01 83.5% 82.2%
4962086 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.51 26.0 3.34e-01 74.1% 100.0%
5055228 1.1.1.7 beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.50 42.0 3.15e-01 96.5% 55.4%
D4 medium residues 371-459
PDB
D5 medium residues 925-1033_1057-1070
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8hnzA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 47.0 3.31e-01 88.6% 69.8%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 40.0 3.79e-01 78.0% 61.7%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.55 39.0 3.91e-01 74.8% 100.0%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.87e-01 72.4% 85.1%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.52 39.0 3.64e-01 78.0% 75.8%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.80e-01 78.0% 77.2%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.98e-01 72.4% 87.9%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 4.04e-01 75.6% 100.0%
1xg7A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.51 36.0 3.45e-01 72.4% 63.6%
6cxtB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 33.0 3.47e-01 77.2% 72.3%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 4.05e-01 83.7% 99.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000749 2498.5.1.0 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.61 43.0 4.66e-01 73.2% 91.4%
4976104 2498.5.1.0 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.61 43.0 4.56e-01 73.2% 93.6%
5073879 2498.5.1.1 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.61 43.0 4.66e-01 74.0% 94.3%
4203215 2498.5.1.1 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.60 42.0 4.65e-01 72.4% 97.0%
4948289 2487.1.1.1 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 0.60 43.0 3.51e-01 74.0% 99.6%
3551714 592.6.1.2 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › PF26582 0.60 47.0 5.12e-01 82.9% 98.1%
4129995 109.4.1.58 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 0.52 37.0 2.77e-01 73.2% 48.4%
D6 medium residues 1034-1056_1071-1087_1111-1133
PDB
D7 medium residues 1179-1209_1226-1314
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.96 86.0 7.20e-01 91.7% 68.7%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 67.0 5.76e-01 85.8% 61.8%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.78 66.0 5.93e-01 88.3% 74.4%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.59 34.0 4.30e-01 98.3% 97.1%
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.59 37.0 4.02e-01 97.5% 75.5%
2yfvA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 33.0 4.19e-01 93.3% 100.0%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 32.0 4.09e-01 84.2% 94.4%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 32.0 4.11e-01 88.3% 100.0%
1tafA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.56 27.0 3.58e-01 86.7% 83.8%
1f1eA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 43.0 4.03e-01 83.3% 95.4%
7lv8A01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 36.0 4.22e-01 99.2% 95.2%
3v9rA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.52 33.0 3.79e-01 98.3% 87.5%
2nr7A00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.50 39.0 3.35e-01 83.3% 91.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1175858 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.96 91.0 7.50e-01 97.5% 69.8%
3657952 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.76 68.0 5.64e-01 95.0% 85.5%
3808811 235.1.1.2 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.65 59.0 4.89e-01 99.2% 82.0%
4034060 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.59 34.0 4.34e-01 89.2% 98.6%
3405944 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.59 34.0 4.13e-01 97.5% 90.7%
5050299 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.59 34.0 4.33e-01 95.8% 100.0%
3268504 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.58 34.0 4.05e-01 93.3% 85.0%
3510655 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.58 34.0 4.03e-01 93.3% 85.0%
4121495 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 33.0 4.05e-01 84.2% 89.3%
3405147 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.58 33.0 3.95e-01 93.3% 83.7%
3551855 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.58 33.0 3.94e-01 93.3% 83.7%
3621689 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.58 34.0 4.11e-01 95.8% 88.7%
3213193 148.1.1.15 alpha arrays › Histone-like › Histone-related › Histone › CENP-X 0.57 35.0 4.31e-01 100.0% 97.3%
4345919 148.1.3.49 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.57 35.0 4.09e-01 98.3% 90.0%
3836893 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.57 33.0 3.96e-01 98.3% 86.3%
3785585 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.57 32.0 3.86e-01 93.3% 83.7%
3236718 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.57 46.0 3.77e-01 88.3% 92.9%
3933962 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.56 33.0 3.99e-01 95.0% 87.5%
3402320 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.56 32.0 3.77e-01 93.3% 82.5%
3788076 148.1.1.9 alpha arrays › Histone-like › Histone-related › Histone › TFIID_20kDa 0.55 34.0 4.00e-01 96.7% 88.2%
3183783 148.1.1.18 alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.55 34.0 3.58e-01 98.3% 67.3%
3866897 148.1.1.12 alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP 0.55 36.0 3.98e-01 98.3% 83.2%
4974797 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.55 45.0 3.19e-01 90.0% 68.7%
4246144 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 32.0 3.84e-01 90.8% 87.5%
4672223 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.54 33.0 4.12e-01 87.5% 98.7%
3409487 148.1.1.1 alpha arrays › Histone-like › Histone-related › Histone › Histone 0.53 36.0 3.94e-01 100.0% 83.8%
4089409 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 32.0 3.80e-01 91.7% 90.0%
3240928 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 29.0 3.84e-01 76.7% 100.0%
148377 148.1.1.18 alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.52 33.0 3.79e-01 98.3% 87.5%
4026735 148.1.1.1 alpha arrays › Histone-like › Histone-related › Histone › Histone 0.51 34.0 3.51e-01 97.5% 71.3%
D8 medium residues 1210-1225_1315-1372
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.96 91.0 6.53e-01 98.6% 88.5%
4k84A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.58 43.0 3.12e-01 79.7% 81.1%
3e3rA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 39.0 3.64e-01 74.3% 76.8%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.83e-01 70.3% 91.7%
5tl8A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 47.0 2.92e-01 100.0% 30.9%
4xpwA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.53 42.0 3.67e-01 95.9% 89.3%
6ocxA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 36.0 2.91e-01 74.3% 69.8%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.50 41.0 3.70e-01 93.2% 86.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1175858 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.96 91.0 6.46e-01 98.6% 85.2%
3727312 192.2.1.6 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_3 0.66 53.0 4.68e-01 87.8% 72.7%
3286870 191.1.1.15 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_11 0.58 40.0 3.39e-01 95.9% 44.2%
3310900 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 43.0 3.85e-01 85.1% 84.3%
4958930 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.55 34.0 2.84e-01 70.3% 35.4%
3570202 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.53 41.0 3.77e-01 85.1% 99.0%
3372712 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.50 42.0 3.73e-01 93.2% 90.9%
3654708 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.50 43.0 3.48e-01 98.6% 73.3%