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MK605244.1__QBQ73480.1__kac65v162_gp036__00036

Bact-Vir

MK605244.1__QBQ73480.1__kac65v162_gp036__00036

Identity

Accession:
MK605244 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-56_68-99_217-272
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 48.0 4.75e-01 84.9% 89.8%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 35.0 4.02e-01 79.4% 87.5%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.78e-01 76.2% 79.2%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 37.0 4.06e-01 80.2% 85.4%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.88e-01 100.0% 67.3%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.54 43.0 3.98e-01 84.1% 80.8%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.53 29.0 3.22e-01 81.0% 63.0%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 32.0 3.30e-01 77.8% 60.2%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.53 37.0 4.11e-01 81.7% 92.9%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 4.17e-01 80.2% 100.0%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.91e-01 79.4% 92.8%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 4.13e-01 84.1% 85.2%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 35.0 3.81e-01 81.0% 82.1%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.51 34.0 3.13e-01 79.4% 52.2%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.51 39.0 3.81e-01 81.0% 91.2%
6qdwt00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 36.0 4.11e-01 94.4% 100.0%
1h3gA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.95e-01 81.0% 97.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 67.0 5.85e-01 100.0% 83.9%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 62.0 5.71e-01 95.2% 90.6%
4514734 1.1.13.42 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.66 52.0 5.51e-01 83.3% 93.6%
4247994 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.56 40.0 4.43e-01 75.4% 95.0%
984477 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.54 29.0 3.22e-01 80.2% 63.6%
3700354 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 37.0 3.25e-01 71.4% 67.0%
1220114 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.53 37.0 3.28e-01 81.0% 48.4%
3418881 304.8.1.66 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.53 39.0 4.16e-01 78.6% 88.2%
5057638 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.52 39.0 3.74e-01 81.7% 68.0%
3648031 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 39.0 3.12e-01 81.7% 53.2%
D2 high residues 104-200
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 56.0 4.93e-01 100.0% 89.0%
2f68X02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 52.0 4.46e-01 100.0% 82.7%
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 52.0 4.40e-01 100.0% 87.1%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 37.0 3.45e-01 91.8% 48.8%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.58 48.0 4.88e-01 90.7% 100.0%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 50.0 4.52e-01 100.0% 99.3%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 42.0 3.72e-01 93.8% 53.2%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 38.0 3.38e-01 92.8% 46.5%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 48.0 4.39e-01 95.9% 95.3%
2j1aA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 3.98e-01 97.9% 60.3%
4jx0A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 46.0 4.12e-01 94.8% 62.2%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 4.45e-01 90.7% 80.9%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.56e-01 87.6% 79.4%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 45.0 4.42e-01 89.7% 99.0%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 4.30e-01 100.0% 87.2%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 4.01e-01 96.9% 72.9%
7ekdA01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.54 41.0 2.94e-01 82.5% 69.6%
7y6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.25e-01 93.8% 84.5%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.54 47.0 4.28e-01 100.0% 86.5%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.54 46.0 4.14e-01 95.9% 100.0%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 46.0 3.97e-01 96.9% 94.9%
3ideA02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.53 47.0 4.15e-01 99.0% 100.0%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.53 46.0 3.58e-01 97.9% 99.1%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.44e-01 99.0% 94.1%
2g5dA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.53 45.0 3.64e-01 97.9% 93.0%
1nezH00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.03e-01 93.8% 87.5%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.70e-01 96.9% 63.8%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.51 41.0 4.03e-01 89.7% 97.2%
4jklA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.56e-01 92.8% 95.0%
2vvdA00 2.60.120.720 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.73e-01 95.9% 96.3%
2fctB00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 44.0 3.22e-01 100.0% 67.9%
3zypA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.35e-01 94.8% 74.2%
2i1sA00 3.10.290.30 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like 0.51 43.0 3.57e-01 94.8% 88.2%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.22e-01 99.0% 100.0%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.21e-01 100.0% 98.3%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.50 40.0 3.21e-01 89.7% 60.5%
1su4A01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.50 34.0 2.92e-01 88.7% 40.7%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.90e-01 95.9% 95.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995686 11.1.3.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like 0.67 60.0 6.08e-01 97.9% 100.0%
5030085 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.66 59.0 4.99e-01 100.0% 81.8%
3582449 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 46.0 5.08e-01 94.8% 95.9%
1396828 11.1.5.22 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Collagen_bind 0.62 55.0 4.79e-01 100.0% 85.5%
3705470 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.62 31.0 4.13e-01 80.4% 100.0%
3595896 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.62 30.0 3.99e-01 82.5% 95.6%
4028543 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.60 43.0 4.79e-01 96.9% 98.7%
5007090 11.1.1.33 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.58 50.0 4.31e-01 95.9% 85.2%
2512673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 51.0 4.74e-01 100.0% 85.7%
3502307 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.27e-01 93.8% 67.3%
5039890 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 51.0 4.45e-01 100.0% 86.7%
3738766 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.57 50.0 4.47e-01 100.0% 97.9%
3489254 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 49.0 4.01e-01 99.0% 53.0%
5026836 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 32.0 3.67e-01 79.4% 78.6%
1221868 11.1.1.1156 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2, Ig_2 0.55 43.0 3.72e-01 90.7% 50.9%
3489835 11.1.5.94 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.55 48.0 3.99e-01 100.0% 93.5%
5049721 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 42.0 3.91e-01 82.5% 89.6%
4035874 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.55 38.0 3.32e-01 92.8% 47.0%
3752559 10.32.1.28 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.54 47.0 3.79e-01 99.0% 88.8%
4990610 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 47.0 4.71e-01 97.9% 100.0%
4944072 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.53 43.0 4.27e-01 93.8% 85.0%
3971066 10.32.1.27 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › 7TMR-DISMED2 0.53 44.0 3.85e-01 97.9% 59.3%
3300479 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 45.0 4.30e-01 93.8% 95.7%
3924093 10.4.1.33 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_M02D8_5_3rd 0.53 38.0 3.64e-01 94.8% 62.5%
3958011 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 45.0 3.56e-01 95.9% 81.0%
4053990 10.34.1.1 beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N 0.53 39.0 3.89e-01 96.9% 76.0%
4060133 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 41.0 4.24e-01 89.7% 93.3%
3270012 10.32.1.18 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.52 43.0 3.88e-01 93.8% 95.1%
1318480 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.52 45.0 4.01e-01 99.0% 65.8%
3474916 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.52 39.0 3.65e-01 97.9% 63.2%
4969217 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 45.0 4.41e-01 96.9% 91.4%
5046042 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 38.0 3.74e-01 99.0% 74.3%
4946798 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 41.0 4.11e-01 87.6% 92.0%
3595911 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.51 32.0 3.64e-01 87.6% 87.1%
3946603 10.32.1.27 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › 7TMR-DISMED2 0.51 42.0 3.78e-01 97.9% 63.4%
3657264 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.50 43.0 3.78e-01 96.9% 93.3%