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MK605244.1__QBQ73483.1__kac65v162_gp039__00039
Bact-VirMK605244.1__QBQ73483.1__kac65v162_gp039__00039
Identity
- Accession:
- MK605244 ↗
- Kingdom:
- phage
Quality
44.2
mean pLDDT
Taxonomy
TaxID: 2557581
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-62
Domain cluster:
rep: KR153873.1__AKG94469.1__X__00006__D261-317
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.74 | 62.0 | 5.99e-01 | 93.8% | 81.8% |
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.73 | 59.0 | 6.11e-01 | 89.6% | 100.0% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.71 | 59.0 | 3.85e-01 | 93.8% | 38.2% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.65 | 50.0 | 4.96e-01 | 100.0% | 82.4% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.63 | 52.0 | 4.00e-01 | 100.0% | 76.4% |
| 1s04A00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.63 | 55.0 | 4.18e-01 | 97.9% | 97.3% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.62 | 48.0 | 3.44e-01 | 93.8% | 49.4% |
| 4paaA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.59 | 46.0 | 3.25e-01 | 91.7% | 61.2% |
| 1wr8A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.58 | 49.0 | 3.48e-01 | 100.0% | 45.3% |
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.58 | 43.0 | 3.53e-01 | 100.0% | 39.4% |
| 1l6rA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.58 | 47.0 | 3.44e-01 | 100.0% | 47.1% |
| 3arxA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 41.0 | 3.33e-01 | 75.0% | 80.2% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 45.0 | 3.46e-01 | 100.0% | 48.5% |
| 6jwfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 43.0 | 2.67e-01 | 100.0% | 43.0% |
| 3q8dA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.53 | 37.0 | 2.71e-01 | 77.1% | 41.6% |
| 3agrA02 | 3.30.420.540 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 36.0 | 2.25e-01 | 75.0% | 23.9% |
| 3c7xA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.52 | 46.0 | 3.02e-01 | 100.0% | 56.6% |
| 4oj5B01 | 3.30.2020.50 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.52 | 43.0 | 3.74e-01 | 100.0% | 89.0% |
| 3ak5D02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.50 | 39.0 | 2.24e-01 | 100.0% | 14.5% |
| 2hmcA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 40.0 | 2.55e-01 | 97.9% | 36.6% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3987740 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.80 | 59.0 | 6.37e-01 | 87.5% | 95.0% |
| 4512216 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 50.0 | 4.93e-01 | 77.1% | 64.0% |
| 3917719 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.74 | 57.0 | 5.91e-01 | 83.3% | 88.9% |
| 3514431 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.74 | 47.0 | 5.04e-01 | 72.9% | 77.5% |
| 3405960 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.74 | 58.0 | 6.07e-01 | 87.5% | 97.7% |
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.74 | 57.0 | 5.83e-01 | 95.8% | 91.1% |
| 3900165 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.73 | 57.0 | 5.93e-01 | 83.3% | 93.0% |
| 1505155 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.73 | 62.0 | 5.90e-01 | 93.8% | 80.4% |
| 1281772 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.73 | 59.0 | 5.68e-01 | 89.6% | 79.6% |
| 3989854 | 3761.1.1.4 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR | 0.72 | 65.0 | 5.35e-01 | 100.0% | 81.2% |
| 3474295 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.70 | 61.0 | 3.85e-01 | 97.9% | 40.4% |
| 3233229 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.70 | 43.0 | 4.64e-01 | 72.9% | 75.0% |
| 3575826 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.68 | 42.0 | 4.20e-01 | 75.0% | 60.0% |
| 3623217 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.68 | 56.0 | 5.56e-01 | 100.0% | 90.0% |
| 3407018 | 391.1.2.11 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd | 0.67 | 43.0 | 4.00e-01 | 79.2% | 51.7% |
| 3779278 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.67 | 42.0 | 4.46e-01 | 75.0% | 75.0% |
| 3755669 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.66 | 42.0 | 4.48e-01 | 75.0% | 77.5% |
| 4009430 | 11.1.4.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C | 0.65 | 46.0 | 3.78e-01 | 72.9% | 40.9% |
| 3893051 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.65 | 41.0 | 4.46e-01 | 75.0% | 85.7% |
| 1107990 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.65 | 50.0 | 4.98e-01 | 100.0% | 84.0% |
| 3931293 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.64 | 41.0 | 3.62e-01 | 72.9% | 42.7% |
| 4198047 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.64 | 41.0 | 4.35e-01 | 75.0% | 77.5% |
| 4999472 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.64 | 52.0 | 3.49e-01 | 93.8% | 24.2% |
| 5002640 | 3761.1.1.1 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N | 0.63 | 55.0 | 5.42e-01 | 100.0% | 94.0% |
| 3890372 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 53.0 | 4.15e-01 | 100.0% | 50.0% |
| 3214385 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.62 | 43.0 | 3.82e-01 | 79.2% | 50.0% |
| 3566849 | 391.1.2.10 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st | 0.62 | 40.0 | 3.65e-01 | 79.2% | 47.7% |
| 2495545 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.62 | 55.0 | 3.15e-01 | 100.0% | 11.0% |
| 3999532 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.62 | 43.0 | 4.40e-01 | 72.9% | 80.0% |
| 3197761 | 3873.1.1.1 ↗ | a+b two layers › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › Serine/threonine-protein kinase GCN2 C-terminal domain › HGTP_anticodon2 | 0.62 | 49.0 | 3.75e-01 | 91.7% | 97.6% |
| 3545467 | 391.1.2.10 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st | 0.61 | 39.0 | 4.15e-01 | 79.2% | 77.5% |
| 3787837 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.59 | 49.0 | 3.32e-01 | 100.0% | 54.3% |
| 3931292 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.59 | 40.0 | 4.26e-01 | 75.0% | 85.0% |
| 3681536 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 45.0 | 2.69e-01 | 100.0% | 22.4% |
| 3518894 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.55 | 35.0 | 3.85e-01 | 75.0% | 88.6% |
| 3231088 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.55 | 37.0 | 3.97e-01 | 72.9% | 92.5% |
| 3590612 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.55 | 41.0 | 4.39e-01 | 83.3% | 95.0% |
| 3440964 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.55 | 46.0 | 2.83e-01 | 100.0% | 28.6% |
| 3505430 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 42.0 | 3.21e-01 | 91.7% | 70.8% |
| 2085740 | 109.2.1.38 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro81C | 0.53 | 37.0 | 2.19e-01 | 75.0% | 10.8% |
| 3736916 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 42.0 | 3.07e-01 | 95.8% | 60.6% |
| 3487549 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 44.0 | 2.46e-01 | 100.0% | 8.4% |
| 3589515 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.52 | 41.0 | 3.21e-01 | 91.7% | 94.5% |
| 3785258 | 5.1.4.100 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N | 0.52 | 42.0 | 2.48e-01 | 100.0% | 27.2% |
| 3790194 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.50 | 36.0 | 3.74e-01 | 77.1% | 100.0% |
| 3318787 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 43.0 | 2.58e-01 | 100.0% | 41.3% |
D2
medium
residues 109-218