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MK613343.1__QBQ72444.1__CRP1_gp35__00035

Bact-Vir

MK613343.1__QBQ72444.1__CRP1_gp35__00035

Identity

Accession:
MK613343 ↗
Kingdom:
phage

Quality

64.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-1

TaxID: 2559280

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-106
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.55 36.0 4.00e-01 83.1% 84.7%
1x31B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.30e-01 94.4% 84.0%
3czhA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 44.0 2.84e-01 96.6% 37.2%
2ncoA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 41.0 3.94e-01 86.5% 75.5%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 43.0 3.89e-01 98.9% 83.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4520559 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.62 41.0 4.17e-01 100.0% 69.4%
143247 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.62 40.0 4.14e-01 100.0% 70.7%
4330682 148.1.3.113 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_TRIP13_C 0.62 52.0 4.99e-01 93.3% 89.5%
3714475 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.62 40.0 4.45e-01 88.8% 84.3%
4031503 1184.1.1.0 ↗ 0.60 45.0 4.41e-01 100.0% 73.7%
3723625 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.59 43.0 3.82e-01 78.7% 92.6%
3595391 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 37.0 3.29e-01 87.6% 43.8%
3225586 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.56 42.0 3.47e-01 82.0% 46.0%
3905883 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 47.0 3.83e-01 100.0% 83.3%
3238699 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.54 33.0 3.58e-01 94.4% 72.0%
4014593 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 27.0 3.37e-01 95.5% 78.2%
3802179 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 41.0 3.71e-01 86.5% 66.4%
4025496 108.1.1.101 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.52 32.0 3.52e-01 100.0% 77.1%
4639278 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.52 35.0 3.79e-01 82.0% 82.7%
4016998 132.3.1.0 ↗ alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ 0.51 29.0 3.12e-01 94.4% 62.7%
3236773 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 43.0 3.82e-01 95.5% 89.6%
4236132 3254.1.1.1 ↗ alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.51 38.0 3.87e-01 100.0% 81.1%
3865099 108.1.1.155 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_8 0.50 43.0 3.51e-01 100.0% 81.1%
3495304 7583.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom 0.50 42.0 3.05e-01 94.4% 82.5%
3416261 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.50 35.0 3.34e-01 75.3% 62.1%
D2 medium residues 107-235
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 38.0 4.62e-01 80.6% 97.6%
4aqlA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.59 36.0 3.64e-01 98.4% 59.5%
4a8eA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.57 30.0 3.52e-01 72.1% 72.4%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.57 24.0 3.56e-01 79.1% 100.0%
2p9bA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.53 30.0 3.27e-01 97.7% 67.6%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 35.0 3.60e-01 80.6% 69.5%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 40.0 3.84e-01 100.0% 69.7%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.51 36.0 3.02e-01 72.9% 76.1%
3r9mA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.50 42.0 3.05e-01 91.5% 83.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4336918 3529.1.1.2 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_2 0.68 27.0 3.60e-01 98.4% 65.7%
3919097 109.4.1.150 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core 0.64 46.0 2.73e-01 73.6% 28.4%
1240179 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.63 34.0 4.42e-01 97.7% 98.5%
3599021 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.63 27.0 3.70e-01 98.4% 78.5%
3893620 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.55 29.0 3.40e-01 78.3% 69.5%
5051764 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.54 40.0 3.75e-01 76.0% 94.2%
3643377 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.53 30.0 3.07e-01 77.5% 55.3%
4002570 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 37.0 3.46e-01 72.1% 98.8%
4026565 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 31.0 3.55e-01 77.5% 82.2%
D3 medium residues 696-817
PDB
Domain cluster: rep: OR838459.1__WQZ00972.1__X__00078__D74-189
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.68 61.0 4.84e-01 97.5% 72.7%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.63 45.0 3.25e-01 80.3% 27.7%
8iprA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.61 53.0 3.91e-01 98.4% 36.7%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.57 23.0 2.50e-01 76.2% 42.6%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 39.0 3.78e-01 70.5% 89.5%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 43.0 3.59e-01 80.3% 89.5%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.56 36.0 3.72e-01 100.0% 68.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3929570 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.72 51.0 3.72e-01 95.1% 28.3%
4010998 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.68 46.0 4.05e-01 78.7% 47.4%
3608336 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.58 51.0 4.48e-01 91.8% 71.2%
3575774 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.53 49.0 4.67e-01 100.0% 91.4%
D4 medium residues 818-934
PDB
Domain cluster: rep: MK613345.1__QBQ72573.1__CRP3_gp24__00024__D261-354
D5 medium residues 935-1061
PDB