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MK613344.1__QBQ72481.1__CRP2_gp05__00005

Bact-Vir

MK613344.1__QBQ72481.1__CRP2_gp05__00005

Identity

Accession:
MK613344 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-2

TaxID: 2559281

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-79
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6btdA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.67 48.0 3.46e-01 75.0% 80.8%
6lgqC01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.65 49.0 4.00e-01 80.6% 71.0%
1yfbA00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.65 43.0 4.80e-01 72.2% 94.2%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 46.0 4.13e-01 77.8% 71.6%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 45.0 4.28e-01 76.4% 70.9%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.61 41.0 3.65e-01 91.7% 46.8%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 45.0 4.46e-01 80.6% 98.7%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 40.0 4.51e-01 73.6% 96.1%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 44.0 4.52e-01 93.1% 83.6%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.59 42.0 4.30e-01 87.5% 77.5%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 44.0 3.70e-01 79.2% 78.2%
6m36O01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 42.0 3.84e-01 76.4% 70.8%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 43.0 4.16e-01 80.6% 96.3%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.58 44.0 3.55e-01 81.9% 45.1%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.58 43.0 3.75e-01 80.6% 94.6%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.57 42.0 3.73e-01 80.6% 58.9%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 47.0 4.31e-01 93.1% 100.0%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.56 41.0 3.11e-01 79.2% 64.1%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 46.0 3.70e-01 94.4% 78.9%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.56 42.0 3.74e-01 80.6% 62.5%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.55 33.0 3.10e-01 88.9% 47.7%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.89e-01 81.9% 98.8%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 41.0 3.25e-01 81.9% 41.7%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.94e-01 98.6% 65.3%
5e1vB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 43.0 2.97e-01 90.3% 38.0%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 39.0 3.79e-01 80.6% 92.9%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.53 44.0 4.06e-01 91.7% 74.7%
2e55A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.19e-01 91.7% 95.2%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.53 38.0 3.80e-01 93.1% 75.7%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.53 40.0 3.79e-01 88.9% 79.6%
4at7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 46.0 3.44e-01 100.0% 59.2%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 3.04e-01 87.5% 96.2%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 36.0 3.26e-01 75.0% 100.0%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.52e-01 79.2% 88.0%
1in0A02 3.30.70.990 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YajQ-like, domain 2 0.51 38.0 3.54e-01 80.6% 68.5%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 43.0 3.84e-01 98.6% 71.3%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 27.0 2.89e-01 86.1% 58.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3374952 375.4.1.5 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C 0.77 51.0 4.80e-01 73.6% 57.6%
3966283 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 52.0 4.14e-01 79.2% 87.9%
5031988 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.67 45.0 5.18e-01 70.8% 100.0%
3326226 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.63 52.0 4.11e-01 93.1% 60.6%
3934910 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.63 43.0 3.08e-01 72.2% 82.6%
3950217 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.61 42.0 2.82e-01 72.2% 94.1%
3839010 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 42.0 3.97e-01 73.6% 69.4%
3496419 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 42.0 2.45e-01 77.8% 11.5%
3418966 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.58 42.0 2.59e-01 79.2% 14.2%
3331748 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.58 48.0 3.02e-01 94.4% 69.9%
3850704 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 43.0 2.81e-01 80.6% 71.1%
6662 4276.1.1.1 ↗ a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.57 42.0 3.73e-01 80.6% 58.9%
3414142 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.57 43.0 3.37e-01 90.3% 36.4%
6661 4276.1.1.1 ↗ a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.56 42.0 3.74e-01 80.6% 62.5%
3590828 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 42.0 3.71e-01 100.0% 53.6%
5049764 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.46e-01 76.4% 100.0%
4585897 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.56 41.0 2.94e-01 77.8% 94.1%
3245878 59.1.4.1 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.55 40.0 3.04e-01 77.8% 75.6%
4075142 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 3.67e-01 90.3% 93.3%
4985638 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 47.0 3.35e-01 94.4% 53.5%
5050503 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 39.0 2.41e-01 75.0% 45.0%
3716610 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 39.0 3.52e-01 76.4% 81.0%
5051116 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.23e-01 80.6% 84.7%
3791851 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.74e-01 100.0% 71.0%
3660342 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.54 45.0 2.82e-01 94.4% 78.3%
4971260 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 39.0 3.32e-01 80.6% 92.3%
3497279 59.1.4.0 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 0.53 39.0 3.09e-01 79.2% 78.7%
3413789 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.53 46.0 2.91e-01 100.0% 22.5%
4107510 304.36.1.1 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.53 39.0 3.66e-01 80.6% 69.5%
3593438 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 34.0 3.28e-01 75.0% 55.3%
3595378 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 3.23e-01 83.3% 70.0%
4107632 304.36.1.1 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.52 39.0 3.69e-01 80.6% 70.0%
3249154 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 43.0 3.22e-01 94.4% 43.0%
5051386 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.10e-01 80.6% 83.1%
3497850 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.05e-01 80.6% 47.9%
3641525 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.52 37.0 2.83e-01 77.8% 40.3%
3260689 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 43.0 2.86e-01 100.0% 49.3%
3630261 316.1.1.16 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DZF_N 0.51 41.0 3.07e-01 97.2% 50.9%
5077459 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.12e-01 81.9% 88.3%
5058742 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 42.0 2.59e-01 100.0% 32.4%
5038289 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 35.0 2.83e-01 81.9% 37.8%