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MK613344.1__QBQ72489.1__CRP2_gp13__00013

Bact-Vir

MK613344.1__QBQ72489.1__CRP2_gp13__00013

Identity

Accession:
MK613344 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-36
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.73 55.0 4.70e-01 85.7% 88.1%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 57.0 4.00e-01 100.0% 53.0%
4hqsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.70 54.0 3.71e-01 91.4% 81.5%
2cqpA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.68 57.0 4.23e-01 100.0% 71.4%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.66 49.0 3.52e-01 80.0% 42.1%
2jfdA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.66 52.0 4.34e-01 91.4% 78.8%
2b30A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.66 51.0 3.38e-01 97.1% 33.7%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.65 50.0 4.05e-01 88.6% 68.0%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.65 45.0 3.41e-01 74.3% 89.1%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 47.0 3.02e-01 80.0% 54.9%
3kxrA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 47.0 3.27e-01 82.9% 45.2%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 2.79e-01 100.0% 15.8%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 44.0 2.46e-01 74.3% 6.7%
2rvjA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 50.0 3.82e-01 94.3% 73.5%
3ctuA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 43.0 2.88e-01 71.4% 97.2%
6jx5A01 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.63 45.0 3.63e-01 80.0% 100.0%
6mvtA03 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.63 45.0 2.67e-01 77.1% 13.9%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 3.43e-01 80.0% 81.8%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 46.0 3.15e-01 80.0% 44.6%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.61 44.0 2.97e-01 77.1% 33.3%
4cooA03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 42.0 2.89e-01 74.3% 94.9%
1o50A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 45.0 3.07e-01 85.7% 75.2%
2dvkA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.60 44.0 3.05e-01 100.0% 83.7%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 43.0 3.12e-01 80.0% 45.0%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 2.88e-01 80.0% 27.0%
3ebrA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 41.0 2.72e-01 77.1% 85.3%
3afhA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.58 46.0 3.38e-01 94.3% 35.6%
2qkxA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 46.0 2.86e-01 97.1% 40.8%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.08e-01 80.0% 49.1%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 2.99e-01 77.1% 26.2%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.57 47.0 3.48e-01 94.3% 52.7%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 42.0 2.44e-01 85.7% 72.4%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 2.98e-01 80.0% 37.0%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 46.0 3.06e-01 100.0% 65.0%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 43.0 3.10e-01 80.0% 72.1%
2l1aA00 3.10.20.530 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 41.0 3.05e-01 88.6% 48.6%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 38.0 3.34e-01 100.0% 85.5%
2yzqA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 40.0 3.03e-01 85.7% 68.7%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.54 45.0 3.78e-01 100.0% 76.5%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 42.0 3.20e-01 100.0% 70.0%
1ta9B01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 2.82e-01 91.4% 59.9%
3uhjC01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 2.78e-01 94.3% 56.6%
5wq5A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 2.81e-01 94.3% 57.9%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 37.0 2.67e-01 88.6% 75.0%
1g9gA03 4.10.870.10 Few Secondary Structures › Irregular › Endo-1,4-beta-glucanase f; domain 3 › Endo-1,4-beta-glucanase f. Domain 3 0.51 36.0 3.03e-01 77.1% 77.3%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.50 35.0 3.04e-01 91.4% 60.3%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 40.0 3.06e-01 100.0% 36.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976684 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.81 67.0 5.28e-01 100.0% 45.0%
3974688 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.80 66.0 6.02e-01 100.0% 82.0%
3799812 2485.1.1.71 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SelP_N 0.69 55.0 4.03e-01 94.3% 73.3%
3702049 2485.1.1.12 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.69 55.0 3.77e-01 100.0% 86.7%
5071251 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.68 48.0 3.33e-01 77.1% 40.0%
3442291 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.68 47.0 2.62e-01 74.3% 25.9%
3360324 2485.1.1.12 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.68 55.0 3.75e-01 94.3% 83.1%
4153905 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 50.0 3.86e-01 91.4% 37.2%
3980730 2002.1.1.152 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 0.65 44.0 2.43e-01 74.3% 4.8%
3620047 5.1.4.377 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N 0.65 47.0 2.80e-01 82.9% 10.5%
3401112 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.63 49.0 4.25e-01 85.7% 76.7%
3589191 142.1.1.10 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.63 44.0 3.64e-01 77.1% 62.9%
4108510 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.62 44.0 3.56e-01 85.7% 35.0%
4152738 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 45.0 3.91e-01 97.1% 50.7%
3651195 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 48.0 3.85e-01 88.6% 61.3%
4951211 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 44.0 3.12e-01 77.1% 47.5%
4927083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 3.31e-01 74.3% 41.5%
3990034 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.62 44.0 3.35e-01 80.0% 43.3%
3615043 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.47e-01 94.3% 33.6%
3293955 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.60 49.0 2.93e-01 100.0% 80.0%
4973068 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 44.0 3.10e-01 82.9% 50.8%
5031053 244.4.1.2 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.60 42.0 3.30e-01 77.1% 33.8%
3709624 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 3.40e-01 94.3% 33.6%
3028534 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.59 40.0 2.69e-01 85.7% 14.5%
3422502 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.58 41.0 2.91e-01 80.0% 24.8%
4926786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 3.30e-01 80.0% 46.3%
3796903 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.58 43.0 3.26e-01 82.9% 77.6%
3327705 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.58 41.0 2.89e-01 77.1% 38.5%
3590781 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.58 42.0 3.21e-01 74.3% 91.1%
3560659 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 47.0 2.81e-01 100.0% 32.1%
3602007 2486.1.1.0 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.57 46.0 2.70e-01 100.0% 24.2%
3239118 1013.1.1.0 beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain 0.57 44.0 2.89e-01 97.1% 18.4%
3487960 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 39.0 2.35e-01 74.3% 10.2%
4615793 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.57 40.0 3.15e-01 80.0% 42.2%
5082589 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 41.0 3.24e-01 80.0% 45.0%
3618571 282.1.1.0 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.56 45.0 2.96e-01 94.3% 61.6%
4032391 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.56 40.0 3.19e-01 80.0% 44.7%
4939541 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.27e-01 100.0% 47.9%
4994484 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 41.0 2.96e-01 88.6% 49.6%
3700148 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.55 46.0 2.49e-01 100.0% 13.9%
3204019 387.6.1.0 few secondary structure elements › omega toxin-like 0.55 41.0 3.26e-01 85.7% 76.9%
3925385 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.03e-01 82.9% 31.6%
3899209 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 45.0 2.89e-01 100.0% 52.3%
3438309 109.4.1.1271 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.55 46.0 2.72e-01 100.0% 17.6%
3404153 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.54 45.0 2.62e-01 100.0% 26.8%
3683316 109.4.1.2506 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long, TPR_24 0.53 45.0 2.41e-01 94.3% 14.6%
5082776 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 39.0 2.81e-01 85.7% 70.0%
3267265 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 42.0 2.91e-01 94.3% 74.1%
3736412 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 38.0 2.38e-01 100.0% 87.2%
3263167 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 37.0 2.63e-01 82.9% 43.1%
3606882 109.22.1.0 alpha superhelices › Repetitive alpha hairpins › Survival of motor neuron protein-interacting protein 1 › Survival of motor neuron protein-interacting protein 1 0.53 44.0 2.72e-01 100.0% 25.9%
5072417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.02e-01 97.1% 47.5%
3547409 604.1.1.153 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.52 42.0 2.68e-01 97.1% 80.5%
3822888 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 39.0 2.62e-01 91.4% 41.1%
3651700 7579.1.1.42 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.51 45.0 2.68e-01 100.0% 31.1%