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MK613346.1__QBQ72656.1__CRP4_gp47__00047

Bact-Vir

MK613346.1__QBQ72656.1__CRP4_gp47__00047

Identity

Accession:
MK613346 ↗
Kingdom:
phage

Quality

71.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Veravirus› Roseobacter_phage_CRP-4

TaxID: 2559283

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-88
PDB
Domain cluster: representative
D2 high residues 124-196
PDB
Domain cluster: rep: MG592447.1__AUR85179.1__NVP1070O_15__00015__D108-173
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 44.0 4.52e-01 82.2% 69.0%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 58.0 5.31e-01 95.9% 92.4%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.65 47.0 4.35e-01 87.7% 58.8%
3o3mB01 1.20.1270.370 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 53.0 4.74e-01 95.9% 64.1%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.63 45.0 4.18e-01 76.7% 72.9%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.93e-01 83.6% 98.3%
3rlfG01 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.60 52.0 3.47e-01 94.5% 38.1%
7y9hB01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 44.0 2.83e-01 76.7% 92.1%
3tjtA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.59 42.0 4.33e-01 75.3% 87.3%
1bgcA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 49.0 3.79e-01 93.2% 86.1%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.56 42.0 3.75e-01 86.3% 55.7%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.55 40.0 4.03e-01 83.6% 77.0%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.54 40.0 3.83e-01 80.8% 71.9%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.54 43.0 4.10e-01 91.8% 83.5%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 47.0 4.06e-01 100.0% 96.4%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.51 39.0 3.10e-01 80.8% 62.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3875614 225.1.1.16 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › DUF4554 0.66 54.0 3.56e-01 87.7% 23.9%
3649222 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.66 59.0 3.71e-01 98.6% 26.8%
3241028 101.1.2.649 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28730 0.65 38.0 3.66e-01 71.2% 50.6%
3037767 7579.1.1.89 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.55 40.0 2.39e-01 82.2% 10.8%
4056285 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.54 49.0 4.48e-01 100.0% 78.9%