←Back to structures

MK613347.1__QBQ72669.1__CRP5_gp03__00003

Bact-Vir

MK613347.1__QBQ72669.1__CRP5_gp03__00003

Identity

Accession:
MK613347 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Veravirus› Roseobacter_phage_CRP-5

TaxID: 2559284

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-63
PDB
Domain cluster: rep: OR420748.1__WMM95566.1__CRP143_gp1__00001__D2-54
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.76 67.0 4.82e-01 100.0% 71.2%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.75 64.0 5.42e-01 94.9% 71.4%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.70 59.0 5.32e-01 93.2% 100.0%
3ke6A02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.69 61.0 4.75e-01 100.0% 91.3%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 50.0 4.35e-01 79.7% 100.0%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.68 58.0 4.59e-01 98.3% 63.2%
3v10A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 60.0 4.34e-01 100.0% 62.2%
1ry9A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.67 57.0 4.51e-01 100.0% 60.2%
3aj7A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 56.0 5.18e-01 94.9% 100.0%
3wy2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 55.0 5.13e-01 91.5% 100.0%
1shsA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 55.0 4.47e-01 93.2% 89.6%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 57.0 5.07e-01 100.0% 95.5%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 56.0 4.33e-01 94.9% 86.9%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 58.0 4.77e-01 100.0% 85.8%
3wnkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 54.0 4.24e-01 91.5% 99.2%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 55.0 3.94e-01 93.2% 88.4%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 55.0 3.93e-01 93.2% 86.0%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 54.0 4.48e-01 94.9% 90.7%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 54.0 4.65e-01 94.9% 99.0%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 54.0 4.46e-01 96.6% 87.3%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 56.0 5.06e-01 100.0% 100.0%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 4.07e-01 100.0% 46.4%
3fkuS02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 50.0 4.21e-01 88.1% 77.7%
4xb3A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 51.0 4.85e-01 91.5% 100.0%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 50.0 4.13e-01 88.1% 72.7%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 48.0 4.26e-01 86.4% 64.1%
4rnyA03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.63 50.0 4.00e-01 91.5% 88.3%
3amkA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 53.0 4.57e-01 100.0% 97.0%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 48.0 4.09e-01 86.4% 76.5%
1x44A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 47.0 3.99e-01 84.7% 61.2%
2oafB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 42.0 3.17e-01 71.2% 45.8%
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 51.0 4.89e-01 91.5% 94.1%
7ahsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.18e-01 84.7% 67.0%
1waaC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.08e-01 84.7% 65.6%
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 4.06e-01 100.0% 65.2%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 52.0 4.03e-01 96.6% 84.6%
2rdyA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.60 50.0 3.12e-01 100.0% 64.3%
4aeeA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 49.0 4.76e-01 93.2% 95.5%
3dhuA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 49.0 4.57e-01 94.9% 100.0%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 52.0 4.47e-01 100.0% 93.6%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.59 42.0 3.61e-01 81.4% 47.4%
6k34A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 48.0 3.13e-01 94.9% 85.7%
4liqE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 4.22e-01 86.4% 73.1%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.58 50.0 4.12e-01 100.0% 82.6%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 50.0 4.07e-01 100.0% 63.9%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 48.0 3.87e-01 96.6% 88.1%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 3.80e-01 86.4% 89.9%
3ndzE00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 4.09e-01 98.3% 64.5%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.80e-01 88.1% 87.3%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 4.05e-01 88.1% 90.2%
1bagA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 46.0 4.30e-01 96.6% 98.7%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.56 46.0 3.16e-01 100.0% 58.2%
1tg7A02 2.102.20.10 Mainly Beta › 3-layer Sandwich › beta-galactosidase, domain 2 › Beta-galactosidase, domain 2 0.56 47.0 3.46e-01 100.0% 48.1%
4hkjD00 2.60.240.30 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › 0.56 51.0 3.50e-01 100.0% 57.0%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 47.0 3.09e-01 100.0% 59.9%
4ildA03 2.60.40.4200 Mainly Beta › Sandwich › Immunoglobulin-like › Pestivirus envelope glycoprotein E2, C-terminal domain 0.55 40.0 3.60e-01 88.1% 55.3%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.55 39.0 3.26e-01 76.3% 93.1%
2nykA02 2.60.40.2530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.77e-01 88.1% 60.9%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 41.0 2.60e-01 100.0% 14.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 42.0 3.04e-01 88.1% 88.5%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.57e-01 86.4% 65.5%
1ju2A02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.51 43.0 3.16e-01 100.0% 51.9%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943581 881.4.1.1 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.76 65.0 5.28e-01 94.9% 62.7%
3385480 319.3.1.3 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › DUF7494 0.75 61.0 4.61e-01 88.1% 43.7%
5052820 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 52.0 3.53e-01 74.6% 98.4%
3278555 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.71 63.0 4.73e-01 100.0% 52.4%
3737177 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.71 59.0 4.84e-01 93.2% 58.2%
3385545 319.3.1.0 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.70 55.0 4.67e-01 86.4% 59.0%
3838015 319.3.1.3 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › DUF7494 0.70 55.0 4.29e-01 86.4% 79.2%
3838528 319.3.1.0 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.69 55.0 4.42e-01 88.1% 48.7%
2093579 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.68 57.0 5.12e-01 91.5% 100.0%
2775472 12.3.1.21 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.68 60.0 3.94e-01 100.0% 45.4%
4962569 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.68 55.0 4.08e-01 88.1% 66.2%
4472787 3018.1.1.3 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › PF28558 0.67 53.0 4.82e-01 86.4% 96.2%
4441621 3943.1.1.3 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › flgK_1st_1 0.67 49.0 4.26e-01 78.0% 84.4%
2879522 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.67 45.0 3.93e-01 71.2% 46.7%
3387490 319.3.1.0 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.66 53.0 4.46e-01 88.1% 55.0%
3609985 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.66 54.0 4.11e-01 89.8% 75.6%
3975309 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.66 58.0 4.74e-01 100.0% 70.0%
4645680 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 55.0 5.23e-01 93.2% 95.7%
3845583 11.1.1.984 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28742 0.65 52.0 3.99e-01 86.4% 54.8%
3970193 319.3.1.0 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.65 51.0 4.40e-01 86.4% 56.8%
4205157 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.64 54.0 4.27e-01 94.9% 87.2%
4639125 12.5.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.64 55.0 3.91e-01 98.3% 76.3%
3040855 12.3.1.21 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hyd_65N_2 0.64 48.0 3.17e-01 94.9% 20.2%
1806777 12.1.1.53 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C_2 0.64 55.0 4.92e-01 98.3% 96.5%
3262565 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 4.47e-01 88.1% 62.4%
3396863 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.63 50.0 4.13e-01 88.1% 73.6%
3407225 244.2.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C 0.63 47.0 3.96e-01 79.7% 56.1%
3756607 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.63 50.0 3.97e-01 88.1% 64.0%
3663152 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.63 55.0 4.10e-01 98.3% 91.3%
4996591 309.1.2.2 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_bind_4 0.62 55.0 3.94e-01 100.0% 45.1%
4856471 11.1.5.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 0.62 54.0 4.17e-01 100.0% 64.7%
3227180 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 52.0 3.46e-01 93.2% 56.7%
3471364 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.62 49.0 3.65e-01 88.1% 50.6%
5022840 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.61 41.0 3.70e-01 71.2% 77.6%
4939506 244.2.1.7 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.60 45.0 3.70e-01 79.7% 54.3%
3260570 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.10e-01 86.4% 66.7%
4548669 244.2.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.60 44.0 4.11e-01 79.7% 73.3%
1411067 244.2.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.59 45.0 4.20e-01 84.7% 74.4%
4025843 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 52.0 4.22e-01 100.0% 97.4%
5024359 12.1.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.59 49.0 4.47e-01 94.9% 98.8%
4992142 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 47.0 3.16e-01 98.3% 48.2%
163054 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.57 45.0 4.05e-01 88.1% 90.2%
4951451 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 50.0 3.74e-01 100.0% 40.0%
221111 527.1.1.2 ↗ beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI 0.56 51.0 3.50e-01 100.0% 57.0%
5052888 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 41.0 3.39e-01 88.1% 80.0%
3897425 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.52 36.0 3.30e-01 74.6% 62.4%
3701567 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.50 37.0 3.14e-01 84.7% 49.6%