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MK613348.1__QBQ72729.1__CRP6_gp05__00005

Bact-Vir

MK613348.1__QBQ72729.1__CRP6_gp05__00005

Identity

Accession:
MK613348 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-6

TaxID: 2559285

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-84
PDB
Domain cluster: rep: MT028491.1__QIG65875.1__phiOC_p210__00209__D56-124
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10902.14 best WYL_2 30.3 5.50e-07 92.5% 82.4%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 6.20e-01 100.0% 85.7%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 5.13e-01 90.0% 92.2%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.63 48.0 3.58e-01 98.8% 32.7%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 37.0 4.44e-01 86.3% 95.9%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 38.0 4.39e-01 87.5% 98.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.41e-01 100.0% 94.9%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.86e-01 87.5% 87.9%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 45.0 3.89e-01 82.5% 81.7%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 44.0 4.40e-01 95.0% 79.0%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.58 46.0 3.33e-01 87.5% 67.2%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.87e-01 87.5% 84.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.55e-01 100.0% 93.1%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 4.26e-01 85.0% 96.6%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 3.54e-01 83.7% 80.8%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 3.31e-01 83.7% 81.2%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 3.57e-01 82.5% 74.3%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.59e-01 82.5% 82.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 4.22e-01 86.3% 96.7%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.54 40.0 3.32e-01 100.0% 44.6%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.32e-01 83.7% 70.8%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 4.12e-01 82.5% 98.3%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.62e-01 82.5% 84.0%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.54 41.0 3.62e-01 86.3% 96.1%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 31.0 3.11e-01 85.0% 54.1%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 3.42e-01 82.5% 85.2%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 4.04e-01 86.3% 95.2%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.04e-01 82.5% 64.7%
1h8eG02 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.53 40.0 3.14e-01 82.5% 82.0%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 3.66e-01 97.5% 62.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.68e-01 86.3% 74.7%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.31e-01 82.5% 82.5%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.36e-01 82.5% 76.3%
6czfA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 39.0 2.64e-01 100.0% 20.6%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.90e-01 85.0% 95.1%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.90e-01 86.3% 82.1%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 2.93e-01 82.5% 66.7%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 4.12e-01 93.8% 100.0%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 38.0 3.34e-01 82.5% 81.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.50 35.0 3.79e-01 100.0% 89.4%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 35.0 3.59e-01 87.5% 77.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 56.0 5.93e-01 97.5% 84.3%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.78 61.0 6.30e-01 100.0% 88.0%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 60.0 6.08e-01 98.8% 91.3%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 47.0 4.11e-01 97.5% 44.8%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 6.12e-01 98.8% 93.8%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 60.0 5.91e-01 98.8% 87.1%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 6.01e-01 98.8% 89.3%
3274582 4.1.1.365 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.68 44.0 5.06e-01 97.5% 96.4%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.67 44.0 5.03e-01 100.0% 98.2%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.67 47.0 3.69e-01 100.0% 35.8%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.90e-01 86.3% 100.0%
3256498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 4.90e-01 95.0% 94.5%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.65 52.0 5.29e-01 100.0% 87.5%
4422325 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 60.0 5.77e-01 98.8% 89.9%
3922679 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.64 40.0 4.77e-01 95.0% 100.0%
3669492 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 44.0 3.72e-01 100.0% 46.4%
3784968 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 43.0 4.34e-01 86.3% 82.5%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 43.0 4.08e-01 97.5% 70.5%
3468988 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.55 42.0 3.26e-01 83.7% 82.6%
5066657 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.55 40.0 3.37e-01 77.5% 68.6%
3283078 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 41.0 3.43e-01 82.5% 84.6%
3199589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.58e-01 100.0% 88.9%
5031647 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 39.0 4.15e-01 100.0% 87.1%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.09e-01 90.0% 92.3%
3914462 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 38.0 3.76e-01 88.7% 71.1%
3404828 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 39.0 3.04e-01 82.5% 60.0%
3922015 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.52 37.0 3.19e-01 77.5% 78.5%
3918564 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.51 36.0 3.76e-01 82.5% 80.0%
3605458 309.1.1.16 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, M16C_assoc, PreP_C 0.51 39.0 2.22e-01 82.5% 76.8%
3180762 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.51 38.0 2.87e-01 82.5% 63.7%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.51 41.0 3.32e-01 91.3% 55.8%
3787905 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.50 35.0 3.68e-01 82.5% 82.9%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.50 38.0 4.03e-01 83.7% 91.4%
1866299 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.50 37.0 3.26e-01 82.5% 75.6%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.50 32.0 3.69e-01 86.3% 88.3%