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MK613348.1__QBQ72774.1__CRP6_gp50__00050

Bact-Vir

MK613348.1__QBQ72774.1__CRP6_gp50__00050

Identity

Accession:
MK613348 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-6

TaxID: 2559285

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-103
PDB
Domain cluster: rep: NC_041880.1__YP_009595356.1__FDG97_gp219__00131__D6-93
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mzvA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.75 70.0 4.68e-01 100.0% 36.9%
3n3dB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.75 70.0 4.67e-01 100.0% 35.1%
1wolA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.73 41.0 3.66e-01 91.0% 41.8%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 47.0 5.54e-01 76.4% 100.0%
5b00A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.67 61.0 4.34e-01 100.0% 40.2%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 45.0 4.31e-01 97.8% 62.5%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.64 41.0 3.96e-01 79.8% 58.2%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 55.0 4.22e-01 94.4% 64.5%
1jkvA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 55.0 4.25e-01 96.6% 77.2%
4fp4A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.62 54.0 3.99e-01 98.9% 70.4%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.61 46.0 4.70e-01 92.1% 80.7%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 51.0 4.61e-01 89.9% 94.2%
2b1eA01 1.20.58.1150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 42.0 4.28e-01 87.6% 73.3%
1zoyA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.61 46.0 4.18e-01 87.6% 60.7%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 46.0 4.68e-01 91.0% 81.1%
2epkX03 1.20.120.670 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase 0.60 49.0 3.70e-01 89.9% 59.8%
1o3uA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 41.0 3.75e-01 71.9% 54.2%
3mx3A01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 49.0 3.78e-01 89.9% 61.1%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 46.0 4.57e-01 82.0% 87.1%
1ug7A00 1.20.120.360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Axin interactor, dorsalization-associated protein, N-terminal domain 0.58 44.0 3.87e-01 79.8% 55.5%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.58 42.0 3.89e-01 87.6% 59.0%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 51.0 4.40e-01 98.9% 82.6%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.57 42.0 4.27e-01 96.6% 80.5%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.57 42.0 4.34e-01 91.0% 81.2%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.57 37.0 3.66e-01 73.0% 62.0%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 47.0 4.09e-01 89.9% 60.0%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 48.0 4.46e-01 89.9% 77.8%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.56 47.0 4.28e-01 88.8% 75.9%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.56 49.0 3.78e-01 96.6% 83.8%
1pw4A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.56 47.0 3.60e-01 93.3% 81.8%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.55 43.0 4.52e-01 100.0% 97.4%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.55 44.0 3.99e-01 86.5% 70.2%
1r2jA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 47.0 4.05e-01 96.6% 86.8%
3pivA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 46.0 3.85e-01 93.3% 61.5%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.54 47.0 3.87e-01 97.8% 90.8%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.54 45.0 4.22e-01 91.0% 83.6%
5niiB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 3.00e-01 73.0% 82.4%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 39.0 4.02e-01 88.8% 80.5%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.53 37.0 2.56e-01 73.0% 30.9%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 44.0 3.49e-01 97.8% 73.3%
1w36B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 47.0 3.41e-01 100.0% 42.7%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.50 42.0 4.03e-01 91.0% 83.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3704359 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.73 44.0 3.45e-01 96.6% 30.9%
3430123 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 45.0 3.51e-01 100.0% 31.7%
3817615 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 45.0 4.23e-01 96.6% 54.3%
3837777 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 44.0 4.18e-01 100.0% 54.3%
5072449 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 49.0 4.97e-01 78.7% 73.3%
3731082 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 50.0 5.45e-01 78.7% 89.3%
4947260 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 49.0 5.19e-01 78.7% 82.5%
4972182 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.67 48.0 5.41e-01 78.7% 94.3%
4957771 5069.1.3.137 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF7521 0.67 48.0 4.80e-01 74.2% 87.8%
4999686 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.66 47.0 5.07e-01 77.5% 86.7%
3960865 604.12.1.21 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF3017 0.66 50.0 5.14e-01 78.7% 88.2%
3218745 5001.1.1.84 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz 0.66 46.0 3.24e-01 71.9% 29.4%
4978312 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.65 46.0 5.19e-01 78.7% 92.9%
3606343 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.64 53.0 3.73e-01 88.8% 51.1%
4432932 3615.1.1.10 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › TMEM125 0.63 54.0 4.72e-01 96.6% 97.8%
3234270 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 46.0 4.78e-01 83.1% 81.2%
3195627 109.4.1.1646 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Foie-gras_1, PF29907 0.62 47.0 3.40e-01 79.8% 29.6%
3535566 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 47.0 4.19e-01 79.8% 69.6%
3480252 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.61 46.0 4.93e-01 78.7% 93.3%
4862562 7579.1.1.32 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FrsA-like 0.61 44.0 3.08e-01 75.3% 23.6%
3628093 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.61 47.0 4.45e-01 82.0% 75.2%
3499049 109.46.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH 0.60 44.0 3.79e-01 78.7% 50.7%
3830809 633.4.1.0 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.60 51.0 4.62e-01 92.1% 95.8%
3341807 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.60 46.0 4.32e-01 91.0% 66.4%
2100268 1071.1.1.1 ↗ alpha complex topology › CRISPR-associated endonuclease Cpf1 second helical domain › CRISPR-associated endonuclease Cpf1 second helical domain › CRISPR-associated endonuclease Cpf1 second helical domain › cas_Cpf1_2nd 0.59 49.0 3.76e-01 93.3% 94.5%
4021885 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.59 50.0 3.62e-01 92.1% 67.8%
3371182 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 45.0 4.25e-01 93.3% 68.6%
3733651 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.58 49.0 4.15e-01 93.3% 80.0%
3693645 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.58 49.0 4.15e-01 93.3% 80.7%
3938862 604.1.1.98 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1 0.57 46.0 4.34e-01 87.6% 75.5%
5072045 604.10.1.0 ↗ alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac 0.57 46.0 4.33e-01 89.9% 72.4%
3914072 633.23.1.19 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › TMEM37 0.56 47.0 3.80e-01 93.3% 91.7%
3829016 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 44.0 3.89e-01 91.0% 59.2%
4025011 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.56 44.0 4.07e-01 92.1% 65.0%
3812592 109.4.1.1948 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle 0.56 38.0 3.15e-01 89.9% 38.7%
3602790 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 48.0 3.72e-01 97.8% 78.5%
3795092 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.56 47.0 4.07e-01 91.0% 72.6%
3944747 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.56 51.0 3.96e-01 96.6% 96.6%
3358814 3684.1.1.2 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.56 45.0 3.20e-01 86.5% 96.9%
3723852 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 48.0 4.23e-01 97.8% 90.4%
3801503 109.4.1.1433 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_8, TPR_12 0.55 51.0 3.15e-01 100.0% 19.0%
4018653 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 46.0 3.86e-01 89.9% 66.0%
3192708 109.42.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › E3 ubiquitin-protein ligase SHPRH first helical domain › E3 ubiquitin-protein ligase SHPRH first helical domain 0.55 51.0 3.91e-01 100.0% 68.4%
3713609 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 47.0 3.38e-01 96.6% 36.0%
3491748 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.54 48.0 3.82e-01 97.8% 88.9%
3938199 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 41.0 3.32e-01 92.1% 41.1%
5011899 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.54 48.0 3.79e-01 100.0% 70.5%
3887311 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 43.0 3.07e-01 87.6% 35.3%
4541769 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.54 44.0 3.37e-01 88.8% 59.5%
3691077 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 43.0 3.72e-01 87.6% 71.4%
4680153 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.54 44.0 3.88e-01 94.4% 97.1%
3819480 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 3.61e-01 87.6% 51.6%
4162329 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.53 43.0 3.37e-01 93.3% 83.7%
5026456 5045.1.1.0 ↗ alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A 0.52 48.0 3.31e-01 100.0% 58.2%
3485924 3291.1.1.152 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CDK5RAP3 0.52 46.0 3.48e-01 100.0% 84.4%
3818287 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 46.0 3.29e-01 96.6% 49.0%
3581259 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.52 40.0 4.08e-01 91.0% 83.3%
3954068 633.23.1.7 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DUF5336 0.51 43.0 3.89e-01 93.3% 91.2%
3494750 109.4.1.1195 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HPF1 0.51 35.0 3.27e-01 83.1% 53.3%
3724046 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 3.43e-01 97.8% 55.5%
3601679 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.51 41.0 3.44e-01 88.8% 76.1%
3170650 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.50 44.0 2.90e-01 100.0% 26.8%