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MK613348.1__QBQ72775.1__CRP6_gp51__00051
Bact-VirMK613348.1__QBQ72775.1__CRP6_gp51__00051
Identity
- Accession:
- MK613348 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-60
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hqmD05 | 3.90.105.10 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 | 0.56 | 41.0 | 3.71e-01 | 82.4% | 57.3% |
| 1t3uA01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.52 | 30.0 | 3.21e-01 | 76.5% | 67.4% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.51 | 41.0 | 2.87e-01 | 90.2% | 63.6% |
| 1zoqA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.51 | 34.0 | 2.46e-01 | 72.5% | 31.9% |
| 2j0aA00 | 3.90.550.50 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.51 | 34.0 | 2.26e-01 | 70.6% | 29.6% |
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.50 | 30.0 | 3.24e-01 | 78.4% | 68.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010674 | 4076.3.1.11 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 | 0.84 | 62.0 | 6.08e-01 | 88.2% | 72.7% |
| 4057499 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.65 | 48.0 | 3.80e-01 | 84.3% | 40.9% |
| 4654615 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.65 | 48.0 | 3.18e-01 | 84.3% | 20.4% |
| 4244236 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.59 | 43.0 | 3.49e-01 | 84.3% | 38.2% |
| 3717172 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 39.0 | 2.22e-01 | 76.5% | 7.4% |
| 4950221 | 101.1.2.143 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_34 | 0.57 | 42.0 | 3.51e-01 | 88.2% | 50.0% |
| 5075830 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 3.47e-01 | 86.3% | 53.6% |
| 3327949 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.56 | 41.0 | 2.60e-01 | 80.4% | 24.7% |
| 4396206 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.55 | 41.0 | 3.96e-01 | 92.2% | 71.7% |
| 5014012 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.55 | 43.0 | 2.89e-01 | 90.2% | 32.9% |
| 4000244 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 43.0 | 2.68e-01 | 88.2% | 59.7% |
| 5081199 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.54 | 42.0 | 3.12e-01 | 88.2% | 38.7% |
| 4963940 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 39.0 | 3.65e-01 | 84.3% | 74.3% |
D2
high
residues 66-124
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lj2A00 | 1.20.5.970 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein | 0.73 | 60.0 | 4.98e-01 | 93.2% | 58.5% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.71 | 49.0 | 4.86e-01 | 71.2% | 85.2% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.66 | 47.0 | 3.84e-01 | 76.3% | 62.8% |
| 3ejnA03 | 1.20.120.840 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain | 0.66 | 55.0 | 4.54e-01 | 96.6% | 70.3% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.64 | 50.0 | 3.65e-01 | 100.0% | 30.7% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.64 | 53.0 | 4.98e-01 | 94.9% | 95.8% |
| 2kn6A02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.64 | 49.0 | 4.51e-01 | 100.0% | 63.4% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.60 | 47.0 | 4.40e-01 | 93.2% | 92.5% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.60 | 42.0 | 3.57e-01 | 76.3% | 71.6% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.59 | 44.0 | 4.54e-01 | 86.4% | 100.0% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 40.0 | 3.76e-01 | 72.9% | 93.0% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.53 | 38.0 | 3.44e-01 | 81.4% | 76.9% |
| 4ex6A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 41.0 | 4.02e-01 | 91.5% | 82.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957970 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.68 | 56.0 | 4.46e-01 | 98.3% | 91.8% |
| 3748372 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 48.0 | 3.12e-01 | 74.6% | 44.7% |
| 3643079 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 46.0 | 4.35e-01 | 93.2% | 62.9% |
| 4439850 | 632.2.1.36 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › AATF-Che1 | 0.65 | 54.0 | 3.74e-01 | 96.6% | 42.7% |
| 3294636 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 45.0 | 3.64e-01 | 88.1% | 39.1% |
| 3710358 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 50.0 | 3.71e-01 | 94.9% | 36.9% |
| 4013656 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.60 | 43.0 | 4.40e-01 | 93.2% | 81.8% |
| 3471712 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.59 | 51.0 | 3.95e-01 | 94.9% | 85.6% |
| 3197794 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 40.0 | 2.86e-01 | 76.3% | 42.1% |
| 4645964 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.56 | 45.0 | 2.88e-01 | 98.3% | 30.4% |
| 3334347 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.52 | 46.0 | 3.86e-01 | 98.3% | 67.0% |
| 4062262 | 304.8.1.65 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446 | 0.52 | 42.0 | 3.22e-01 | 93.2% | 55.3% |