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MK613348.1__QBQ72778.1__CRP6_gp54__00054
Bact-VirMK613348.1__QBQ72778.1__CRP6_gp54__00054
Identity
- Accession:
- MK613348 ↗
- Kingdom:
- phage
Quality
82.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 53-127
Domain cluster:
representative
D2
high
residues 138-209
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.71 | 51.0 | 4.63e-01 | 73.6% | 96.7% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 39.0 | 4.01e-01 | 93.1% | 64.7% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 42.0 | 4.09e-01 | 70.8% | 62.2% |
| 2ejsA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 39.0 | 4.20e-01 | 70.8% | 84.5% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 37.0 | 3.89e-01 | 90.3% | 74.2% |
| 7watB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 42.0 | 2.90e-01 | 93.1% | 65.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3191301 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.71 | 54.0 | 5.69e-01 | 80.6% | 98.5% |
| 3567670 | 192.5.1.14 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA | 0.69 | 43.0 | 3.99e-01 | 97.2% | 51.1% |
| 5017062 | 7094.1.1.4 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › PF27273 | 0.68 | 40.0 | 4.00e-01 | 91.7% | 57.3% |
| 3740352 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.66 | 49.0 | 5.12e-01 | 77.8% | 89.2% |
| 5024662 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.64 | 45.0 | 3.45e-01 | 75.0% | 33.1% |
| 3333417 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.64 | 40.0 | 3.74e-01 | 98.6% | 50.0% |
| 3233327 | 103.1.1.143 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N | 0.61 | 42.0 | 4.50e-01 | 88.9% | 88.3% |
| 3925617 | 192.5.1.14 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA | 0.61 | 42.0 | 3.99e-01 | 72.2% | 75.3% |
| 3488461 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.58 | 47.0 | 2.97e-01 | 87.5% | 17.1% |
| 3626769 | 192.5.1.14 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA | 0.58 | 42.0 | 3.85e-01 | 75.0% | 73.3% |
| 5078389 | 3930.1.1.17 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › Helicase_C | 0.57 | 44.0 | 3.10e-01 | 83.3% | 67.7% |
| 3731325 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.56 | 39.0 | 4.23e-01 | 75.0% | 98.2% |
| 3942487 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.55 | 45.0 | 3.85e-01 | 90.3% | 81.7% |
| 4882409 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.54 | 41.0 | 3.66e-01 | 81.9% | 63.5% |
| 437078 | 3713.1.1.1 ↗ | alpha bundles › Small terminase central domain › Small terminase central domain › Small terminase central domain › DNA_Packaging | 0.54 | 42.0 | 3.88e-01 | 91.7% | 65.9% |
| 4939992 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.53 | 37.0 | 2.89e-01 | 73.6% | 68.5% |
D3
high
residues 225-269
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.88 | 65.0 | 5.86e-01 | 77.8% | 59.3% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 45.0 | 4.11e-01 | 71.1% | 48.3% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 53.0 | 4.38e-01 | 82.2% | 100.0% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 57.0 | 5.69e-01 | 88.9% | 87.0% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 47.0 | 4.18e-01 | 71.1% | 84.6% |
| 6azyA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.70 | 61.0 | 4.38e-01 | 100.0% | 99.2% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 50.0 | 4.16e-01 | 80.0% | 90.4% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.68 | 47.0 | 4.12e-01 | 73.3% | 51.4% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.68 | 53.0 | 3.81e-01 | 86.7% | 73.6% |
| 2xkrA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.67 | 56.0 | 3.30e-01 | 100.0% | 66.6% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 47.0 | 4.21e-01 | 75.6% | 53.0% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.67 | 51.0 | 3.93e-01 | 82.2% | 84.5% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 54.0 | 5.39e-01 | 93.3% | 87.0% |
| 2bpoA04 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.66 | 52.0 | 3.64e-01 | 100.0% | 25.3% |
| 2rfbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.65 | 52.0 | 3.15e-01 | 95.6% | 72.8% |
| 2qqpD00 | 6.10.140.650 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 45.0 | 4.69e-01 | 73.3% | 85.0% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 57.0 | 4.01e-01 | 100.0% | 54.5% |
| 1v92A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 43.0 | 4.37e-01 | 73.3% | 76.1% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 49.0 | 4.48e-01 | 100.0% | 63.9% |
| 5t3wA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 50.0 | 3.61e-01 | 93.3% | 56.9% |
| 4g4sO01 | 3.40.50.12120 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › POC1 chaperone | 0.62 | 51.0 | 3.42e-01 | 100.0% | 22.0% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 46.0 | 3.55e-01 | 82.2% | 48.5% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 44.0 | 3.89e-01 | 77.8% | 85.1% |
| 3b0xA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.60 | 47.0 | 3.83e-01 | 100.0% | 44.8% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 42.0 | 3.77e-01 | 75.6% | 95.4% |
| 3bm1A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.60 | 48.0 | 3.22e-01 | 88.9% | 58.8% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.59 | 50.0 | 3.65e-01 | 97.8% | 42.6% |
| 2cmpA00 | 1.10.10.1400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif | 0.57 | 46.0 | 4.36e-01 | 95.6% | 91.1% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.56 | 41.0 | 3.02e-01 | 91.1% | 26.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 44.0 | 3.67e-01 | 100.0% | 48.9% |
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.54 | 43.0 | 3.59e-01 | 97.8% | 50.0% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.52 | 36.0 | 3.60e-01 | 80.0% | 83.3% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 184700 | 103.1.1.8 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DSX_dimer | 0.86 | 64.0 | 5.24e-01 | 82.2% | 45.0% |
| 3805873 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.85 | 61.0 | 5.86e-01 | 77.8% | 68.0% |
| 3758209 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.84 | 59.0 | 5.31e-01 | 82.2% | 55.0% |
| 3612189 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.82 | 57.0 | 5.72e-01 | 80.0% | 73.3% |
| 3428162 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.79 | 54.0 | 5.11e-01 | 80.0% | 60.0% |
| 4966224 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.76 | 61.0 | 3.92e-01 | 93.3% | 20.1% |
| 2605083 | 3432.1.1.1 ↗ | alpha bundles › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Transcript_VP30 | 0.75 | 52.0 | 3.76e-01 | 82.2% | 25.6% |
| 3414564 | 2008.1.1.29 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 | 0.73 | 64.0 | 3.89e-01 | 100.0% | 16.5% |
| 1888148 | 3432.1.1.1 ↗ | alpha bundles › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Minor nucleoprotein VP30 C-terminal domain › Transcript_VP30 | 0.73 | 53.0 | 3.70e-01 | 91.1% | 25.2% |
| 3990616 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.70 | 56.0 | 5.07e-01 | 93.3% | 66.2% |
| 3969401 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 56.0 | 3.61e-01 | 93.3% | 34.2% |
| 3226963 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.69 | 54.0 | 4.75e-01 | 95.6% | 58.5% |
| 3897595 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.69 | 49.0 | 4.34e-01 | 75.6% | 52.3% |
| 3249342 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.68 | 48.0 | 4.41e-01 | 75.6% | 56.7% |
| 4976690 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 51.0 | 4.93e-01 | 82.2% | 80.0% |
| 4996865 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.66 | 46.0 | 4.39e-01 | 75.6% | 63.6% |
| 3428408 | 632.2.1.30 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Auxin_canalis | 0.66 | 46.0 | 3.88e-01 | 95.6% | 44.0% |
| 3413696 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.66 | 52.0 | 4.21e-01 | 88.9% | 44.4% |
| 3730715 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 43.0 | 4.13e-01 | 73.3% | 56.4% |
| 3694447 | 5050.1.1.56 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr, TRI12 | 0.65 | 53.0 | 3.01e-01 | 100.0% | 30.5% |
| 3181588 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.65 | 54.0 | 3.40e-01 | 97.8% | 38.9% |
| 3295940 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 56.0 | 5.28e-01 | 100.0% | 90.9% |
| 3430911 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.62 | 51.0 | 4.42e-01 | 100.0% | 62.5% |
| 4013825 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 47.0 | 3.99e-01 | 93.3% | 50.7% |
| 3349480 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.60 | 49.0 | 3.97e-01 | 93.3% | 60.0% |
| 3512962 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.58 | 44.0 | 3.74e-01 | 84.4% | 46.3% |
| 3232510 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.57 | 41.0 | 3.59e-01 | 84.4% | 48.0% |
| 4027675 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 46.0 | 3.29e-01 | 100.0% | 28.2% |
| 3470183 | 864.1.1.1 ↗ | a+b two layers › DLC › DLC › DLC › Dynein_light | 0.56 | 46.0 | 3.80e-01 | 97.8% | 64.4% |
| 3270187 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.56 | 43.0 | 3.13e-01 | 95.6% | 48.1% |
| 3812869 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.55 | 42.0 | 3.30e-01 | 91.1% | 39.0% |
| 4950837 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 44.0 | 3.60e-01 | 97.8% | 55.3% |
| 1527468 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.51 | 45.0 | 3.37e-01 | 100.0% | 67.6% |