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MK613349.1__QBQ72801.1__CRP7_gp08__00008

Bact-Vir

MK613349.1__QBQ72801.1__CRP7_gp08__00008

Identity

Accession:
MK613349 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-71
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.72 55.0 5.42e-01 82.6% 79.5%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.71 54.0 5.33e-01 84.1% 77.8%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.71 55.0 5.44e-01 85.5% 80.6%
2cyyA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.70 49.0 4.39e-01 72.5% 84.2%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 55.0 5.04e-01 85.5% 68.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.70 60.0 5.44e-01 95.7% 95.7%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 56.0 4.88e-01 87.0% 63.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 59.0 4.50e-01 95.7% 93.4%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.68 60.0 4.71e-01 100.0% 70.9%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 53.0 4.62e-01 87.0% 73.8%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.66 50.0 4.32e-01 82.6% 83.8%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.65 58.0 4.73e-01 100.0% 69.5%
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 52.0 4.48e-01 87.0% 75.2%
4bfiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 52.0 4.43e-01 87.0% 73.2%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 4.45e-01 87.0% 70.2%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 50.0 4.15e-01 87.0% 70.6%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 53.0 4.55e-01 98.6% 73.8%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.63 49.0 4.27e-01 84.1% 66.0%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.62 47.0 3.56e-01 87.0% 64.9%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.21e-01 87.0% 69.9%
1jbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 4.06e-01 85.5% 60.7%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 46.0 3.58e-01 85.5% 87.2%
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.60 40.0 3.67e-01 94.2% 52.7%
2jlmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 47.0 3.56e-01 88.4% 82.5%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.59 40.0 3.40e-01 72.5% 41.9%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 51.0 4.00e-01 98.6% 78.9%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 4.26e-01 87.0% 65.9%
5w1eA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 42.0 3.14e-01 98.6% 28.9%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 48.0 4.00e-01 100.0% 73.9%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 3.94e-01 82.6% 59.2%
7a1rA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 50.0 4.26e-01 100.0% 73.7%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.57 48.0 3.86e-01 97.1% 57.0%
2gx9A00 3.30.420.330 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain 0.57 43.0 3.56e-01 81.2% 52.4%
2ep6A01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 50.0 4.18e-01 100.0% 72.1%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 49.0 3.94e-01 98.6% 59.2%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 42.0 3.04e-01 82.6% 72.8%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 49.0 3.97e-01 100.0% 67.9%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 44.0 3.53e-01 84.1% 46.0%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 43.0 3.76e-01 82.6% 54.3%
1birA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.56 39.0 3.44e-01 98.6% 49.0%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 46.0 3.41e-01 92.8% 80.6%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.67e-01 97.1% 49.7%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.91e-01 79.7% 100.0%
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 44.0 3.26e-01 92.8% 80.2%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 44.0 4.13e-01 98.6% 80.9%
2g0qA01 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.51 40.0 3.50e-01 88.4% 95.7%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.49e-01 97.1% 75.9%
4uapA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 38.0 3.09e-01 84.1% 42.0%
3o5yB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 41.0 3.39e-01 98.6% 70.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979947 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.71 49.0 4.20e-01 72.5% 72.7%
3236808 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.70 39.0 3.71e-01 88.4% 47.5%
3996685 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.70 61.0 4.91e-01 100.0% 71.9%
5065226 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.69 48.0 4.31e-01 72.5% 90.5%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.68 52.0 5.25e-01 81.2% 85.5%
3723377 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.68 55.0 4.52e-01 88.4% 71.2%
3868654 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.68 54.0 3.89e-01 87.0% 41.0%
1687174 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.68 60.0 4.71e-01 100.0% 70.9%
3917685 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.68 51.0 4.64e-01 85.5% 61.1%
3773671 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.67 53.0 4.25e-01 87.0% 58.6%
3786112 317.1.1.0 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase 0.67 59.0 4.51e-01 100.0% 70.3%
5027806 11.1.1.246 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.66 52.0 4.67e-01 85.5% 66.3%
3933905 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.66 55.0 4.44e-01 95.7% 67.1%
5045395 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 48.0 4.15e-01 82.6% 100.0%
3479367 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.63 48.0 4.98e-01 100.0% 90.6%
157637 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.62 55.0 4.38e-01 100.0% 67.4%
3881492 109.4.1.411 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom 0.62 50.0 3.26e-01 88.4% 23.2%
4929079 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.61 42.0 3.79e-01 71.0% 75.5%
3964360 4187.1.1.2 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL 0.61 44.0 4.23e-01 78.3% 78.8%
3502411 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.60 52.0 4.56e-01 97.1% 88.6%
4085259 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.60 52.0 3.55e-01 98.6% 83.8%
3998369 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.60 52.0 4.05e-01 98.6% 67.7%
4024040 822.1.1.0 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.59 48.0 4.98e-01 100.0% 96.9%
4520085 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.59 33.0 3.67e-01 81.2% 69.1%
3999455 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 41.0 3.40e-01 72.5% 47.7%
3959592 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 51.0 3.98e-01 98.6% 65.2%
4170578 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.59 44.0 4.10e-01 97.1% 63.3%
4078982 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.58 49.0 4.10e-01 98.6% 81.5%
3764994 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 51.0 3.15e-01 98.6% 34.3%
4959407 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.58 39.0 4.32e-01 73.9% 100.0%
3490538 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 50.0 3.72e-01 98.6% 59.4%
3998366 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 50.0 3.88e-01 100.0% 69.0%
5075402 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.57 47.0 3.25e-01 100.0% 58.2%
3223345 11.1.4.63 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF870 0.57 38.0 3.71e-01 71.0% 71.2%
3220695 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 48.0 4.08e-01 98.6% 75.0%
4668792 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.56 41.0 3.64e-01 81.2% 53.0%
3775253 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 50.0 3.61e-01 98.6% 48.9%
3351227 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 3.07e-01 98.6% 27.4%
4958378 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 50.0 4.64e-01 98.6% 83.5%
3515391 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 48.0 3.31e-01 98.6% 40.4%
3265744 10.2.1.55 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.55 40.0 3.66e-01 81.2% 58.9%
3874298 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 36.0 2.80e-01 87.0% 29.7%
1600023 65.1.1.8 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › EF_0837-like_N 0.55 31.0 3.45e-01 82.6% 69.6%
4982275 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.38e-01 84.1% 62.2%
331637 3435.1.1.1 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.53 42.0 2.83e-01 91.3% 98.7%
4935495 7578.1.1.1 a/b three-layered sandwiches › PhnH-like › PhnH-like › PhnH-like › PhnH 0.53 40.0 3.04e-01 85.5% 67.2%
4084909 7578.1.1.1 a/b three-layered sandwiches › PhnH-like › PhnH-like › PhnH-like › PhnH 0.53 40.0 3.04e-01 85.5% 48.9%
3963537 3435.1.1.1 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.51 42.0 2.81e-01 92.8% 98.7%
3715848 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 43.0 3.57e-01 98.6% 65.2%
3266199 213.1.1.19 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.51 40.0 3.11e-01 89.9% 39.4%
3528508 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 41.0 3.64e-01 98.6% 80.0%
423697 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 38.0 2.90e-01 79.7% 43.6%