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MK613349.1QBQ72809.1CRP7_gp16__00016

Bact-Vir

MK613349.1__QBQ72809.1__CRP7_gp16__00016

Identity

Accession:: MK613349 ↗
Kingdom:: phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-7

TaxID: 2559286

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-139

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4gzrB00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.73	32.0	4.22e-01	91.8%	72.7%
4qgpB00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.66	34.0	3.78e-01	92.5%	61.7%
5nl6A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	34.0	3.80e-01	96.3%	65.7%
3s6pG00	6.10.140.1660	Special › Helix non-globular › Helix Hairpins ›	0.63	23.0	3.01e-01	98.5%	56.9%
3aeiA00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.62	40.0	4.76e-01	94.8%	92.6%
3piwA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.59	49.0	4.67e-01	88.8%	99.4%
1vctA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.58	36.0	3.94e-01	97.0%	74.3%
3sngA00	1.10.575.10	Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease	0.56	51.0	4.05e-01	100.0%	85.0%
2v0xA01	1.10.287.3160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	40.0	3.70e-01	77.6%	92.3%
3sqnA02	1.10.1790.40	Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD ›	0.53	30.0	3.18e-01	79.1%	60.2%
2a3qA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.53	35.0	3.84e-01	70.9%	80.5%
3u4qA02	1.10.274.50	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 ›	0.52	39.0	3.83e-01	100.0%	71.3%

ECOD (26)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3510900	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.66	58.0	4.96e-01	94.8%	67.1%
3866137	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.63	56.0	4.66e-01	94.8%	61.3%
4973230	1079.1.1.0 ↗	alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA	0.62	46.0	3.99e-01	78.4%	85.5%
3466971	5050.1.1.2 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2	0.62	52.0	4.28e-01	91.8%	62.8%
4937016	3939.1.1.0 ↗	alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain	0.62	36.0	3.39e-01	96.3%	46.7%
4521600	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.61	48.0	4.12e-01	94.8%	53.4%
3235606	5050.1.1.8 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1	0.60	52.0	4.19e-01	94.8%	63.8%
3493758	1188.1.1.1 ↗	alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip	0.60	52.0	4.06e-01	94.0%	82.5%
3226292	5050.1.1.6 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP	0.58	50.0	4.07e-01	94.8%	58.1%
4978069	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.58	45.0	3.98e-01	82.1%	71.4%
3493963	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.58	34.0	3.89e-01	94.8%	78.0%
3988581	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.58	37.0	4.44e-01	97.0%	96.7%
4026941	177.1.1.2 ↗	alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › S1-P1_nuclease	0.56	51.0	4.04e-01	100.0%	85.1%
5028061	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.56	37.0	4.37e-01	98.5%	98.9%
4028685	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.56	41.0	4.54e-01	94.8%	91.8%
4956296	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.54	42.0	3.61e-01	82.1%	65.5%
3742586	3447.1.1.5 ↗	alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Steroid_dh	0.54	38.0	3.15e-01	72.4%	75.9%
4479929	601.1.1.89 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › FUSC	0.52	47.0	4.18e-01	100.0%	75.4%
3208862	5059.1.1.5 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA	0.52	47.0	3.45e-01	100.0%	41.9%
4967023	3646.1.1.1 ↗	alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ	0.52	37.0	3.14e-01	73.1%	48.6%
3339462	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.51	46.0	3.45e-01	98.5%	49.6%
3985522	4041.1.1.0 ↗	a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase	0.51	34.0	3.86e-01	99.3%	90.0%
3334905	3745.1.1.1 ↗	alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex	0.51	45.0	3.24e-01	95.5%	44.2%
4957738	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.51	34.0	3.20e-01	94.8%	56.2%
3869688	6108.1.1.1 ↗	alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_M,GED	0.50	35.0	3.14e-01	94.8%	51.4%
5034929	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.50	41.0	3.54e-01	88.1%	89.7%

D2 high residues 145-319

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3oyyA01	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.66	25.0	4.16e-01	77.1%	95.5%
2iw3A05	2.40.50.990	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.61	26.0	3.26e-01	84.0%	62.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5034706	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.68	25.0	3.74e-01	77.1%	77.3%
3782925	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	27.0	3.55e-01	84.6%	76.8%
4942841	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.57	35.0	4.13e-01	80.6%	90.4%
3486447	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.55	28.0	3.52e-01	77.1%	79.0%