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MK613349.1__QBQ72821.1__CRP7_gp28__00028
Bact-VirMK613349.1__QBQ72821.1__CRP7_gp28__00028
Identity
- Accession:
- MK613349 ↗
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-143
Domain cluster:
rep: OR420738.1__WMM95109.1__HTVC131P_gp22__00022__D7-123
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02739.23 best | 5_3_exonuc_N | 44.2 | 2.40e-11 | 99.3% | 62.2% |
D2
high
residues 144-230
Domain cluster:
rep: IMGVR_UViG_3300026212_000048-3300026212-Ga0208409_10053144__D159-229
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zdbA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.75 | 60.0 | 6.04e-01 | 86.2% | 87.6% |
| 1b43A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.71 | 49.0 | 5.64e-01 | 85.1% | 100.0% |
| 5hmlA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.71 | 54.0 | 5.64e-01 | 80.5% | 92.5% |
| 5v07Z02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.71 | 56.0 | 5.92e-01 | 85.1% | 98.7% |
| 5k97A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.67 | 49.0 | 5.36e-01 | 85.1% | 100.0% |
| 3h7iA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.66 | 50.0 | 5.30e-01 | 81.6% | 100.0% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.63 | 54.0 | 4.12e-01 | 97.7% | 86.8% |
| 4dwnA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 49.0 | 4.80e-01 | 96.6% | 78.4% |
| 1hypA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.56 | 41.0 | 4.37e-01 | 92.0% | 92.0% |
| 4huqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 37.0 | 2.64e-01 | 72.4% | 22.2% |
| 3otdA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.54 | 43.0 | 3.23e-01 | 92.0% | 32.9% |
| 2xepB02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 46.0 | 3.39e-01 | 100.0% | 78.5% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.53 | 41.0 | 4.32e-01 | 98.9% | 96.2% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838579 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.86 | 69.0 | 7.20e-01 | 85.1% | 98.8% |
| 3956065 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.77 | 61.0 | 6.40e-01 | 83.9% | 100.0% |
| 2168201 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.77 | 62.0 | 5.46e-01 | 86.2% | 65.1% |
| 3163747 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 63.0 | 3.86e-01 | 88.5% | 17.8% |
| 4561919 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 62.0 | 4.42e-01 | 87.4% | 32.7% |
| 3980678 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 63.0 | 4.14e-01 | 88.5% | 26.0% |
| 4072515 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 61.0 | 3.86e-01 | 86.2% | 18.6% |
| 3964109 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.76 | 59.0 | 6.35e-01 | 82.8% | 100.0% |
| 3515038 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.76 | 63.0 | 5.51e-01 | 88.5% | 69.6% |
| None | — | 0.75 | 62.0 | 6.21e-01 | 88.5% | 90.0% | |
| 3987574 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.75 | 63.0 | 4.25e-01 | 88.5% | 27.5% |
| 4030601 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.75 | 62.0 | 5.61e-01 | 88.5% | 69.6% |
| 4299586 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.75 | 57.0 | 5.98e-01 | 80.5% | 100.0% |
| 4233346 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 62.0 | 4.10e-01 | 88.5% | 24.2% |
| 4339694 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 62.0 | 3.85e-01 | 88.5% | 17.4% |
| 2074406 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.75 | 63.0 | 5.86e-01 | 89.7% | 78.3% |
| 4367091 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 62.0 | 4.17e-01 | 88.5% | 26.6% |
| 4319500 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 60.0 | 3.68e-01 | 85.1% | 16.7% |
| 4644646 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.75 | 61.0 | 6.20e-01 | 87.4% | 91.8% |
| 4429068 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 58.0 | 5.11e-01 | 82.8% | 60.0% |
| 4364220 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 61.0 | 5.41e-01 | 87.4% | 68.3% |
| 4594308 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 60.0 | 5.44e-01 | 86.2% | 67.8% |
| 4657900 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 61.0 | 5.47e-01 | 88.5% | 66.7% |
| 4237116 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 60.0 | 6.25e-01 | 86.2% | 97.5% |
| 4303922 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 60.0 | 5.41e-01 | 86.2% | 68.7% |
| 4030950 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 59.0 | 5.40e-01 | 86.2% | 67.8% |
| 4440292 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 61.0 | 5.52e-01 | 88.5% | 67.0% |
| 3610020 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 60.0 | 6.06e-01 | 86.2% | 91.8% |
| 3293024 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.73 | 60.0 | 5.13e-01 | 87.4% | 59.3% |
| 4575153 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.73 | 57.0 | 5.36e-01 | 82.8% | 71.4% |
| 3942250 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.73 | 60.0 | 5.15e-01 | 88.5% | 74.1% |
| 4481584 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.73 | 59.0 | 5.34e-01 | 86.2% | 70.4% |
| 3388110 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.73 | 57.0 | 3.78e-01 | 82.8% | 23.0% |
| 3593817 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.73 | 60.0 | 6.24e-01 | 88.5% | 100.0% |
| 4299768 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 56.0 | 5.20e-01 | 82.8% | 68.2% |
| 4343577 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 56.0 | 4.03e-01 | 82.8% | 30.6% |
| 3283743 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.72 | 57.0 | 3.81e-01 | 85.1% | 22.7% |
| 4291004 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 56.0 | 3.80e-01 | 82.8% | 24.6% |
| 4173211 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 56.0 | 3.73e-01 | 82.8% | 23.1% |
| 3839957 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 59.0 | 3.92e-01 | 88.5% | 24.7% |
| 4341259 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.72 | 57.0 | 6.12e-01 | 85.1% | 100.0% |
| 4995753 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.71 | 58.0 | 5.25e-01 | 88.5% | 67.2% |
| 3787227 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.71 | 55.0 | 5.85e-01 | 87.4% | 96.0% |
| 3899527 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.64 | 48.0 | 4.71e-01 | 96.6% | 73.7% |
| 154849 | 110.1.1.4 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN | 0.61 | 48.0 | 4.71e-01 | 86.2% | 99.0% |
| 3193662 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.55 | 40.0 | 4.21e-01 | 78.2% | 98.8% |
| 3731785 | 206.1.1.82 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580 | 0.52 | 42.0 | 2.96e-01 | 90.8% | 32.8% |
| 3462301 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.50 | 37.0 | 3.25e-01 | 80.5% | 63.6% |