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MK613349.1__QBQ72827.1__CRP7_gp34__00034

Bact-Vir

MK613349.1__QBQ72827.1__CRP7_gp34__00034

Identity

Accession:
MK613349 ↗
Kingdom:
phage

Quality

44.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-146
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a2tA00 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 65.0 6.19e-01 96.6% 78.5%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 65.0 5.82e-01 96.6% 70.4%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 23.0 4.05e-01 71.6% 100.0%
1vlaA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 24.0 3.86e-01 71.6% 90.5%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 26.0 3.70e-01 82.8% 82.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 26.0 3.97e-01 82.8% 92.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 26.0 3.81e-01 82.8% 93.8%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 38.0 4.40e-01 83.6% 92.5%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 31.0 3.96e-01 79.3% 91.8%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 33.0 4.04e-01 80.2% 91.0%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 35.0 4.03e-01 80.2% 86.1%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.58 28.0 3.52e-01 70.7% 75.3%
1fbnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 26.0 3.55e-01 81.9% 94.1%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 27.0 3.27e-01 97.4% 72.2%
5lm7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 32.0 3.71e-01 84.5% 84.6%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 30.0 3.41e-01 94.8% 73.5%
3psiA06 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 34.0 3.67e-01 82.8% 74.0%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 34.0 3.56e-01 79.3% 68.5%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 32.0 3.99e-01 76.7% 100.0%
2kcmA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 32.0 3.77e-01 81.0% 93.2%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 26.0 2.99e-01 82.8% 64.0%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 33.0 3.81e-01 80.2% 100.0%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 26.0 3.39e-01 79.3% 96.6%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972842 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.81 68.0 6.56e-01 95.7% 79.2%
3965688 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.81 65.0 6.16e-01 96.6% 72.6%
3730357 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.79 67.0 6.27e-01 96.6% 74.3%
5069938 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.79 60.0 6.28e-01 97.4% 87.6%
3713169 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.79 67.0 5.76e-01 96.6% 58.9%
4510334 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.78 66.0 6.47e-01 97.4% 82.4%
4968397 2.6.1.8 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › N6_N4_Mtase 0.78 62.0 4.07e-01 96.6% 22.4%
1833415 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.78 50.0 5.29e-01 92.2% 72.1%
3609625 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.77 67.0 5.72e-01 96.6% 59.4%
4926947 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.76 60.0 4.47e-01 81.9% 61.2%
3596658 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.76 65.0 5.63e-01 96.6% 60.6%
3609631 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.76 68.0 6.19e-01 95.7% 76.7%
3392076 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.76 68.0 6.03e-01 96.6% 67.9%
3599041 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.76 67.0 6.23e-01 95.7% 79.3%
3634014 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.76 67.0 6.24e-01 96.6% 77.9%
3407824 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.75 57.0 6.07e-01 96.6% 91.0%
3743204 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.74 65.0 5.82e-01 96.6% 69.7%
4965290 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.74 67.0 6.08e-01 96.6% 81.3%
4261758 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.73 66.0 5.86e-01 96.6% 69.4%
4534120 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.73 66.0 5.30e-01 96.6% 54.0%
4023463 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.73 63.0 5.75e-01 96.6% 70.7%
3785402 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.73 66.0 5.84e-01 96.6% 71.2%
3535276 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.73 56.0 5.78e-01 93.1% 84.5%
4030587 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.73 65.0 5.74e-01 96.6% 67.3%
3485853 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.73 65.0 5.57e-01 96.6% 62.2%
5042477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 27.0 4.18e-01 81.0% 86.7%
3797164 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.72 57.0 5.74e-01 96.6% 83.5%
4966291 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.70 61.0 5.94e-01 96.6% 85.6%
4663095 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.70 57.0 5.71e-01 96.6% 84.9%
3791070 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.70 62.0 5.40e-01 96.6% 68.0%
3939639 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.68 54.0 5.75e-01 94.0% 94.2%
3566729 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.65 58.0 5.93e-01 96.6% 100.0%
3577387 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.65 57.0 5.74e-01 94.8% 94.8%
4933879 2.14.1.1 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.63 29.0 4.09e-01 80.2% 98.0%
5022923 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.63 34.0 3.87e-01 94.8% 69.4%
3215598 391.1.1.13 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC2L_2nd 0.58 24.0 3.39e-01 89.7% 80.0%
3280618 2.1.1.132 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF5666 0.58 34.0 4.19e-01 78.4% 95.7%
4654307 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.56 33.0 4.00e-01 81.0% 95.7%
3716136 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 32.0 3.52e-01 77.6% 71.1%
4046344 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.54 33.0 3.93e-01 80.2% 97.1%
4977527 2.1.1.3 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.54 31.0 3.78e-01 80.2% 98.4%
3367301 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.52 26.0 3.36e-01 81.9% 94.4%
4218734 2.1.1.177 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.52 33.0 3.60e-01 82.8% 77.9%
1832945 2.1.1.78 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PCB_OB 0.51 33.0 3.47e-01 81.9% 70.5%
D2 medium residues 614-705_900-969
PDB
D3 medium residues 706-788_875-899
PDB
D4 medium residues 789-874
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0xA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.55 42.0 3.67e-01 83.7% 87.6%
1aoaA02 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.55 39.0 3.52e-01 76.7% 97.7%
3rgaA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 3.19e-01 73.3% 81.1%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.53 40.0 3.05e-01 82.6% 78.5%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 44.0 3.81e-01 97.7% 88.5%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.67e-01 80.2% 75.7%
3purA02 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.51 44.0 3.09e-01 100.0% 57.2%
3es5A02 1.20.272.60 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.51 39.0 3.52e-01 83.7% 86.1%
3l60A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 40.0 3.00e-01 84.9% 75.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4252883 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.63 45.0 4.16e-01 82.6% 59.1%
4683448 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.61 44.0 4.10e-01 82.6% 59.1%
4934986 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.60 49.0 4.32e-01 89.5% 86.9%
3966244 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.60 44.0 4.11e-01 83.7% 61.8%
4042436 3681.1.1.0 a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.60 44.0 4.12e-01 83.7% 61.8%
4480064 241.12.1.1 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF1054 0.56 46.0 3.65e-01 95.3% 60.5%
4643750 241.12.1.1 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF1054 0.56 47.0 3.69e-01 96.5% 50.0%
4031261 2004.1.1.102 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TerL_ATPase 0.55 40.0 2.79e-01 77.9% 56.3%
3807842 219.1.1.81 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD 0.54 46.0 3.30e-01 97.7% 77.3%
3583791 196.1.1.1 alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.54 37.0 3.22e-01 84.9% 44.4%
3189996 210.1.3.5 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.53 39.0 2.95e-01 81.4% 81.6%
4928315 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 32.0 3.35e-01 73.3% 65.3%
None 0.53 41.0 2.37e-01 84.9% 31.5%
3787269 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 35.0 3.24e-01 72.1% 50.9%
3637098 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 35.0 3.05e-01 70.9% 42.1%
3594965 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 34.0 2.93e-01 70.9% 40.0%
3846669 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 39.0 2.35e-01 83.7% 36.3%
3214720 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 35.0 3.44e-01 73.3% 63.2%
3482328 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 34.0 3.27e-01 70.9% 56.2%
3394225 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 33.0 3.04e-01 70.9% 48.7%
3893439 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 38.0 2.23e-01 87.2% 35.0%
D5 medium residues 988-1086
PDB
D6 medium residues 1247-1367
PDB