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MK613349.1__QBQ72859.1__CRP7_gp66__00066

Bact-Vir

MK613349.1__QBQ72859.1__CRP7_gp66__00066

Identity

Accession:
MK613349 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-38
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.82 68.0 6.02e-01 100.0% 66.7%
4aqlA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.78 61.0 4.23e-01 91.9% 37.4%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.74 54.0 4.60e-01 78.4% 86.4%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.73 60.0 5.33e-01 100.0% 74.1%
2cqpA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.73 58.0 4.32e-01 91.9% 70.4%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.66 47.0 4.15e-01 83.8% 48.4%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.66 55.0 3.62e-01 100.0% 28.1%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.66 52.0 3.54e-01 94.6% 73.9%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 46.0 3.35e-01 75.7% 72.1%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.65 48.0 3.93e-01 83.8% 77.9%
2b30A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.65 49.0 3.31e-01 100.0% 20.0%
4hwtA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 47.0 3.68e-01 100.0% 38.2%
1evlA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 54.0 3.90e-01 100.0% 82.1%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 41.0 2.69e-01 100.0% 14.3%
1t0fA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 46.0 3.10e-01 83.8% 19.1%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 49.0 3.59e-01 86.5% 43.9%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.63 52.0 3.55e-01 100.0% 35.1%
2yzkA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 42.0 2.70e-01 70.3% 43.8%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 3.07e-01 73.0% 37.1%
2qkxA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 43.0 2.65e-01 75.7% 13.4%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.60 47.0 4.00e-01 100.0% 53.3%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 48.0 2.99e-01 94.6% 21.2%
1nubA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 42.0 3.37e-01 86.5% 32.9%
6jx5A01 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.58 46.0 3.84e-01 94.6% 68.0%
3gbyA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 39.0 2.82e-01 70.3% 32.3%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.07e-01 100.0% 29.2%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 45.0 2.74e-01 97.3% 12.2%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 43.0 3.00e-01 100.0% 24.4%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 2.99e-01 100.0% 28.2%
1g9gA03 4.10.870.10 Few Secondary Structures › Irregular › Endo-1,4-beta-glucanase f; domain 3 › Endo-1,4-beta-glucanase f. Domain 3 0.56 38.0 3.16e-01 70.3% 75.8%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.56 39.0 2.95e-01 100.0% 28.7%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.55 43.0 2.77e-01 97.3% 26.6%
6mvtA03 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 43.0 2.57e-01 100.0% 12.4%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.26e-01 100.0% 61.7%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 46.0 3.30e-01 100.0% 33.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 39.0 3.43e-01 97.3% 88.2%
4cvhA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 45.0 2.84e-01 100.0% 52.4%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 45.0 3.38e-01 100.0% 81.0%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 45.0 3.16e-01 100.0% 35.2%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.52 44.0 3.11e-01 100.0% 32.8%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.52 43.0 3.09e-01 100.0% 32.5%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.51 39.0 3.23e-01 100.0% 45.2%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 42.0 2.98e-01 100.0% 29.9%
5wq5A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 2.88e-01 100.0% 44.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974688 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.80 66.0 6.12e-01 100.0% 84.0%
3976684 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.79 64.0 5.16e-01 100.0% 46.3%
4117409 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.78 65.0 3.64e-01 100.0% 7.5%
4670927 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.77 60.0 3.61e-01 97.3% 13.3%
4313160 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.76 59.0 3.33e-01 97.3% 7.7%
3237753 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 54.0 4.47e-01 86.5% 44.3%
3269608 325.1.7.4 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H 0.72 51.0 3.56e-01 75.7% 75.6%
3972257 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.71 55.0 5.49e-01 97.3% 95.0%
3939128 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 4.17e-01 100.0% 32.7%
3494402 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 51.0 5.01e-01 86.5% 77.5%
3405179 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 50.0 4.93e-01 86.5% 75.0%
3422502 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.68 43.0 3.10e-01 100.0% 21.9%
4045455 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.68 46.0 3.50e-01 70.3% 71.8%
4179161 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.67 53.0 4.49e-01 100.0% 54.7%
4152738 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.67 51.0 4.38e-01 100.0% 53.3%
3396736 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.67 53.0 4.66e-01 97.3% 76.9%
3601388 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.67 51.0 4.11e-01 83.8% 80.0%
5010819 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 45.0 3.04e-01 97.3% 17.3%
3399725 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.67 56.0 4.01e-01 100.0% 38.3%
3373537 109.4.1.1297 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.67 44.0 2.39e-01 100.0% 4.3%
3799812 2485.1.1.71 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SelP_N 0.66 53.0 3.96e-01 97.3% 75.2%
3465836 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 3.40e-01 100.0% 28.0%
3360324 2485.1.1.12 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.65 55.0 3.77e-01 97.3% 85.4%
3839138 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.64 52.0 3.23e-01 97.3% 15.0%
3990034 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.64 44.0 3.31e-01 73.0% 43.3%
4545531 220.1.1.255 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 0.63 49.0 3.87e-01 89.2% 46.3%
5072417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 2.98e-01 73.0% 35.0%
3204019 387.6.1.0 few secondary structure elements › omega toxin-like 0.62 49.0 3.84e-01 89.2% 80.8%
3899209 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 49.0 3.19e-01 97.3% 55.4%
3405887 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.60 44.0 2.98e-01 97.3% 38.5%
3244833 3914.1.1.2 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.60 47.0 2.57e-01 89.2% 42.5%
3756402 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.59 39.0 2.22e-01 100.0% 5.8%
4980177 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.58 40.0 2.89e-01 73.0% 29.2%
5058852 301.8.1.1 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.58 45.0 3.12e-01 100.0% 27.0%
3432076 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 40.0 2.90e-01 73.0% 24.5%
3736412 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.58 40.0 2.40e-01 97.3% 9.1%
5082589 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 39.0 3.16e-01 73.0% 43.8%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 41.0 2.99e-01 100.0% 28.2%
4496501 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 41.0 2.42e-01 100.0% 9.1%
3615043 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.37e-01 94.6% 36.4%
4939541 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.22e-01 91.9% 46.2%
3709624 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.31e-01 94.6% 36.4%
4811157 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.56 39.0 2.67e-01 97.3% 17.2%
3560659 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 45.0 2.68e-01 94.6% 87.0%
3547409 604.1.1.153 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.55 42.0 2.67e-01 86.5% 80.0%
4084854 301.8.1.1 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.54 45.0 3.25e-01 100.0% 34.2%
2756225 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.54 38.0 2.59e-01 97.3% 17.7%
3629758 577.1.1.1 alpha arrays › CRIB domain › CRIB domain › CRIB domain › PBD 0.54 46.0 3.69e-01 100.0% 49.3%
3248192 7581.1.1.39 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C, FAE1_CUT1_RppA 0.54 41.0 2.37e-01 91.9% 72.2%
3342026 2004.1.1.872 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › WH_DRP 0.54 37.0 2.61e-01 75.7% 39.2%
4043003 601.7.1.6 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.53 42.0 2.85e-01 100.0% 37.6%
3293955 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.52 43.0 2.55e-01 100.0% 65.7%
3960610 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 43.0 2.75e-01 100.0% 41.4%
3263167 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 36.0 2.67e-01 86.5% 52.8%
5075529 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 42.0 3.02e-01 100.0% 79.1%
3989311 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 36.0 2.47e-01 73.0% 53.1%
3784236 807.1.1.0 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) 0.52 41.0 3.01e-01 91.9% 68.2%
4473331 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 44.0 2.96e-01 100.0% 67.1%
5037441 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 40.0 2.80e-01 83.8% 30.9%
5083877 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 44.0 3.01e-01 100.0% 65.9%
3335794 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 37.0 2.47e-01 100.0% 28.1%
3404153 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.50 43.0 2.54e-01 100.0% 26.2%
3508428 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 41.0 2.72e-01 100.0% 41.7%