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MK618715.1__QBQ72181.1__CPT_Parlo_032__00032
Bact-VirMK618715.1__QBQ72181.1__CPT_Parlo_032__00032
Identity
- Accession:
- MK618715 ↗
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Taxonomy
TaxID: 2557554
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-58
D2
medium
residues 59-127
Domain cluster:
rep: HM208537.1__ADO67717.1__HK639_33__00033__D54-113
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10765.15 best | Phage_P22_NinX | 25.4 | 1.90e-05 | 84.1% | 51.3% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jobA00 | 3.30.160.320 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.72 | 60.0 | 5.24e-01 | 89.9% | 72.5% |
| 4qwoB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.72 | 55.0 | 4.39e-01 | 81.2% | 45.5% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.72 | 59.0 | 5.76e-01 | 89.9% | 98.7% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 57.0 | 5.79e-01 | 89.9% | 97.0% |
| 7v6bA01 | 3.30.160.380 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain | 0.68 | 57.0 | 4.78e-01 | 91.3% | 90.4% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 55.0 | 5.41e-01 | 91.3% | 95.9% |
| 2k49A00 | 2.30.29.80 | Mainly Beta › Roll › PH-domain like › | 0.64 | 46.0 | 3.91e-01 | 76.8% | 81.4% |
| 3h27A00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.63 | 45.0 | 2.74e-01 | 75.4% | 75.8% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.63 | 47.0 | 4.03e-01 | 82.6% | 48.3% |
| 1uu1B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 37.0 | 2.92e-01 | 88.4% | 32.1% |
| 2b5iC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 43.0 | 3.85e-01 | 71.0% | 92.7% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.62 | 45.0 | 2.73e-01 | 76.8% | 74.9% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.62 | 51.0 | 3.58e-01 | 94.2% | 87.6% |
| 3dlbA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 42.0 | 3.24e-01 | 72.5% | 100.0% |
| 4a18O00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.60 | 41.0 | 3.35e-01 | 71.0% | 51.5% |
| 1wi1A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 40.0 | 3.52e-01 | 72.5% | 44.1% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.59 | 45.0 | 3.99e-01 | 82.6% | 86.4% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.59 | 39.0 | 3.39e-01 | 72.5% | 42.1% |
| 2greA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 46.0 | 3.22e-01 | 88.4% | 99.2% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.58 | 45.0 | 4.57e-01 | 91.3% | 90.9% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.57 | 42.0 | 3.11e-01 | 81.2% | 36.9% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 39.0 | 3.23e-01 | 79.7% | 40.8% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.55 | 37.0 | 3.69e-01 | 76.8% | 67.6% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.55 | 38.0 | 3.27e-01 | 71.0% | 71.7% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.55 | 43.0 | 3.50e-01 | 82.6% | 46.7% |
| 5m8cB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 39.0 | 2.55e-01 | 79.7% | 85.4% |
| 7zxkB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 3.57e-01 | 79.7% | 87.1% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 36.0 | 3.22e-01 | 71.0% | 54.9% |
| 1oo0A00 | 3.30.1560.10 | Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi | 0.53 | 42.0 | 3.35e-01 | 88.4% | 93.1% |
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 39.0 | 2.38e-01 | 78.3% | 74.8% |
| 4dzoA02 | 3.30.457.60 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.52 | 38.0 | 3.72e-01 | 81.2% | 100.0% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.51 | 39.0 | 3.57e-01 | 88.4% | 73.5% |
| 1xocA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.51 | 41.0 | 3.54e-01 | 95.7% | 88.3% |
| 3p8aA02 | 2.60.40.4320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 34.0 | 3.17e-01 | 76.8% | 53.3% |
| 3ly1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 41.0 | 3.44e-01 | 92.8% | 93.8% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.50 | 40.0 | 3.72e-01 | 88.4% | 88.8% |
| 3cwxA00 | 3.40.1420.20 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD | 0.50 | 41.0 | 3.47e-01 | 94.2% | 86.4% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4011588 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.81 | 65.0 | 6.37e-01 | 85.5% | 100.0% |
| 3943930 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.77 | 53.0 | 6.02e-01 | 72.5% | 100.0% |
| 3281018 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.75 | 67.0 | 5.84e-01 | 95.7% | 85.0% |
| 4386515 | 330.1.1.30 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF27148 | 0.75 | 53.0 | 5.48e-01 | 73.9% | 81.5% |
| 3080512 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.73 | 64.0 | 5.72e-01 | 97.1% | 82.5% |
| 5075465 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.72 | 49.0 | 5.25e-01 | 71.0% | 81.7% |
| 3709808 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 64.0 | 5.80e-01 | 100.0% | 81.1% |
| 5038844 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.72 | 60.0 | 5.72e-01 | 89.9% | 97.5% |
| 2987310 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.71 | 58.0 | 5.04e-01 | 89.9% | 67.6% |
| 4325664 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.70 | 55.0 | 5.77e-01 | 89.9% | 98.3% |
| 3915668 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.69 | 57.0 | 5.20e-01 | 88.4% | 82.2% |
| 3954708 | 4325.1.1.9 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 | 0.69 | 47.0 | 5.32e-01 | 75.4% | 100.0% |
| 4423214 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 56.0 | 4.86e-01 | 88.4% | 70.5% |
| 3476540 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.69 | 50.0 | 4.21e-01 | 78.3% | 80.0% |
| 3882304 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 56.0 | 4.75e-01 | 88.4% | 66.4% |
| 3326324 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.68 | 51.0 | 5.12e-01 | 79.7% | 81.4% |
| 3887951 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 56.0 | 4.67e-01 | 88.4% | 64.3% |
| 1323413 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.67 | 58.0 | 5.17e-01 | 100.0% | 99.0% |
| 3970166 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.66 | 58.0 | 5.14e-01 | 100.0% | 91.0% |
| 3788141 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.64 | 57.0 | 5.61e-01 | 98.6% | 96.0% |
| 4861973 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.63 | 46.0 | 4.04e-01 | 76.8% | 85.3% |
| 3615642 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.62 | 47.0 | 4.82e-01 | 84.1% | 98.5% |
| 5079725 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 44.0 | 4.66e-01 | 79.7% | 100.0% |
| 3879186 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.61 | 45.0 | 3.46e-01 | 82.6% | 49.7% |
| 3858468 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.60 | 46.0 | 3.28e-01 | 84.1% | 40.9% |
| 3471348 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.60 | 46.0 | 3.12e-01 | 84.1% | 84.1% |
| 4270579 | 220.1.1.121 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 | 0.60 | 43.0 | 3.77e-01 | 78.3% | 50.5% |
| 4081842 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.60 | 44.0 | 3.14e-01 | 79.7% | 39.5% |
| 3783938 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.59 | 46.0 | 4.11e-01 | 88.4% | 84.6% |
| 4049235 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.58 | 43.0 | 3.90e-01 | 79.7% | 90.5% |
| 3526272 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.58 | 41.0 | 3.19e-01 | 73.9% | 76.0% |
| 5031873 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 48.0 | 3.90e-01 | 97.1% | 95.9% |
| 4417234 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.58 | 42.0 | 2.90e-01 | 76.8% | 92.6% |
| 4158084 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.57 | 42.0 | 2.90e-01 | 76.8% | 97.8% |
| 3937269 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.57 | 45.0 | 3.36e-01 | 88.4% | 47.0% |
| 3739339 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.57 | 42.0 | 3.94e-01 | 79.7% | 92.2% |
| 4061424 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.57 | 42.0 | 3.70e-01 | 79.7% | 81.9% |
| 4634499 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.56 | 44.0 | 4.67e-01 | 87.0% | 98.3% |
| 5080416 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.56 | 42.0 | 2.73e-01 | 78.3% | 30.7% |
| 3702242 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 44.0 | 3.82e-01 | 87.0% | 78.2% |
| 3734499 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.56 | 44.0 | 3.93e-01 | 88.4% | 70.9% |
| None | — | 0.56 | 44.0 | 2.74e-01 | 88.4% | 19.5% | |
| 3392311 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 41.0 | 3.16e-01 | 79.7% | 32.7% |
| 3470076 | 861.1.1.0 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein | 0.55 | 42.0 | 3.34e-01 | 82.6% | 95.7% |
| 4341156 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.55 | 41.0 | 3.80e-01 | 81.2% | 94.4% |
| 3256430 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.54 | 41.0 | 3.43e-01 | 85.5% | 67.4% |
| 4648952 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.54 | 40.0 | 3.78e-01 | 82.6% | 94.4% |
| 3446029 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.54 | 44.0 | 3.54e-01 | 95.7% | 93.5% |
| 73522 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.53 | 42.0 | 3.68e-01 | 88.4% | 71.6% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.53 | 42.0 | 3.92e-01 | 89.9% | 81.1% |
| 3267720 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 41.0 | 3.80e-01 | 89.9% | 98.9% |
| 4368394 | 3509.1.1.0 ↗ | a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain | 0.51 | 39.0 | 2.36e-01 | 85.5% | 14.0% |
| 4439346 | 3509.1.1.0 ↗ | a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain | 0.51 | 42.0 | 2.38e-01 | 89.9% | 7.5% |
| 5051779 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.50 | 41.0 | 3.59e-01 | 92.8% | 82.7% |