Back to structures

MK618715.1__QBQ72217.1__CPT_Parlo_068__00068

Bact-Vir

MK618715.1__QBQ72217.1__CPT_Parlo_068__00068

Identity

Accession:
MK618715 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-41_130-185
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 44.0 4.74e-01 75.0% 85.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.63 41.0 4.55e-01 83.3% 82.3%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 40.0 4.54e-01 74.0% 85.1%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.62 39.0 4.42e-01 91.7% 84.9%
3k1zA02 1.10.150.720 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase 0.60 44.0 4.65e-01 85.4% 86.9%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 42.0 3.65e-01 75.0% 68.3%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.58 44.0 4.25e-01 82.3% 93.8%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 37.0 3.71e-01 100.0% 62.4%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 41.0 3.09e-01 74.0% 72.5%
3oyxA02 1.20.58.1560 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 27.0 3.13e-01 91.7% 58.2%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.55 45.0 4.64e-01 100.0% 94.4%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 40.0 4.57e-01 86.5% 100.0%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.55 40.0 3.64e-01 77.1% 63.6%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.54 38.0 3.63e-01 77.1% 59.7%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 45.0 4.03e-01 92.7% 77.3%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 37.0 3.45e-01 71.9% 93.7%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 44.0 4.56e-01 97.9% 97.7%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 44.0 3.94e-01 92.7% 81.2%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 44.0 3.91e-01 92.7% 75.2%
3tl4X01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.52 36.0 3.48e-01 97.9% 61.4%
3memA02 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 44.0 3.23e-01 100.0% 58.4%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 44.0 4.25e-01 93.8% 88.0%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.51 44.0 3.53e-01 96.9% 86.5%
5tj5E00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.50 44.0 3.97e-01 100.0% 89.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967501 632.18.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 › DUF4398 0.66 43.0 4.33e-01 70.8% 66.3%
3592316 7014.1.1.0 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 0.59 52.0 3.55e-01 100.0% 28.3%
4491397 3843.1.1.1 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.59 40.0 4.24e-01 82.3% 80.0%
3377749 3843.1.1.15 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › ETR1_N 0.59 45.0 4.47e-01 81.2% 85.0%
3718570 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.58 49.0 4.51e-01 92.7% 75.2%
4963258 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.56 42.0 4.38e-01 79.2% 95.3%
5052820 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 50.0 4.03e-01 100.0% 61.6%
3527051 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 41.0 4.13e-01 89.6% 76.8%
3174456 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 40.0 2.82e-01 79.2% 66.6%
4994989 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.53 46.0 3.69e-01 100.0% 82.9%
1145756 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.52 39.0 3.71e-01 85.4% 65.8%
4183120 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.52 43.0 3.82e-01 92.7% 72.4%
3594772 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 37.0 3.89e-01 81.2% 87.1%
D2 high residues 43-125
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z5hA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.75 52.0 4.09e-01 100.0% 35.3%
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.65 47.0 3.53e-01 100.0% 30.8%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 57.0 5.30e-01 100.0% 80.2%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.64 43.0 4.67e-01 98.8% 90.6%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 48.0 4.35e-01 98.8% 60.7%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 4.62e-01 100.0% 78.5%
3pf2A01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 53.0 4.16e-01 100.0% 64.6%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.57 51.0 3.71e-01 100.0% 41.5%
5yxgB01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 4.02e-01 100.0% 68.6%
4b6zA01 2.60.40.3120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 4.12e-01 95.2% 64.6%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 4.35e-01 100.0% 74.2%
4ay0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.34e-01 98.8% 85.4%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.22e-01 100.0% 86.3%
1qw9A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 48.0 4.17e-01 97.6% 61.7%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.08e-01 100.0% 59.6%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 47.0 4.13e-01 97.6% 74.6%
3lwcA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 4.16e-01 98.8% 71.8%
1dgjA03 3.90.1170.50 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 0.54 43.0 4.07e-01 88.0% 98.0%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.29e-01 100.0% 72.7%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 48.0 3.84e-01 100.0% 97.0%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 47.0 4.06e-01 98.8% 63.6%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.20e-01 100.0% 81.0%
2oyzA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 4.08e-01 96.4% 76.6%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 47.0 4.02e-01 100.0% 95.7%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.22e-01 100.0% 82.1%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 4.04e-01 97.6% 71.8%
3aclA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 44.0 3.94e-01 97.6% 64.4%
1yllA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 4.24e-01 97.6% 81.5%
2bw8A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.53 45.0 3.39e-01 100.0% 70.4%
4ohvA01 2.60.120.1030 Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain 0.52 40.0 4.14e-01 100.0% 90.0%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.51 44.0 4.21e-01 100.0% 96.0%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 43.0 3.61e-01 100.0% 63.0%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.51 40.0 4.07e-01 98.8% 93.7%
3t30C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.50 44.0 4.28e-01 100.0% 97.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
8624 929.1.1.1 beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin 0.69 46.0 4.57e-01 100.0% 64.0%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.64 55.0 4.37e-01 100.0% 65.4%
3934770 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 49.0 4.76e-01 100.0% 75.8%
3008973 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 55.0 4.54e-01 100.0% 57.7%
4939964 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 49.0 4.94e-01 97.6% 87.1%
4669470 12.1.1.108 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › PF29606 0.61 41.0 4.30e-01 96.4% 77.3%
5067672 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 45.0 4.58e-01 100.0% 85.0%
3477530 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 51.0 4.78e-01 98.8% 86.7%
3500032 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 51.0 4.52e-01 98.8% 76.7%
4961583 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 51.0 4.35e-01 96.4% 63.1%
5047551 11.1.1.1430 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HMG-CoA_red_N 0.57 50.0 4.50e-01 97.6% 87.7%
3620756 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.56 51.0 4.71e-01 100.0% 87.6%
4028545 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.56 44.0 4.57e-01 100.0% 96.0%
4665454 10.32.1.244 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.56 49.0 4.42e-01 100.0% 95.8%
5077448 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.56 46.0 4.28e-01 100.0% 72.4%
7527 325.1.1.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › Ald_Xan_dh_C 0.55 44.0 3.94e-01 88.0% 84.6%
3245882 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 48.0 4.30e-01 98.8% 75.8%
3959581 325.1.1.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like 0.54 44.0 3.71e-01 89.2% 70.0%
5060634 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.54 47.0 4.27e-01 96.4% 85.5%
3477510 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 46.0 4.28e-01 97.6% 85.7%
5030512 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.32e-01 97.6% 79.0%
3968620 10.32.1.280 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF3999 0.53 45.0 4.04e-01 98.8% 94.4%
3397498 11.1.5.27 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.53 46.0 3.86e-01 100.0% 56.7%
3833238 10.32.1.194 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_N 0.52 47.0 4.22e-01 100.0% 99.1%
3481360 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.52 41.0 3.48e-01 96.4% 49.0%
4942750 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 45.0 3.98e-01 100.0% 82.4%
3472541 10.32.1.184 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_II 0.52 41.0 3.94e-01 100.0% 75.5%
5026113 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 42.0 4.09e-01 98.8% 100.0%
5050764 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 45.0 4.09e-01 100.0% 77.4%