←Back to structures

MK630230.2__QBX06954.1__CPT_Spivey_096__00094

Bact-Vir

MK630230.2__QBX06954.1__CPT_Spivey_096__00094

Identity

Accession:
MK630230 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Sugarlandvirus› Klebsiella_phage_Spivey

TaxID: 2562542

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: rep: IMGVR_UViG_3300005906_000005-3300005906-Ga0075127_10004189__D7-59
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.74 57.0 4.86e-01 92.3% 52.4%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.73 57.0 4.82e-01 94.2% 51.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.93e-01 100.0% 86.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.47e-01 100.0% 70.1%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.07e-01 100.0% 84.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.65 56.0 4.17e-01 98.1% 87.0%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 5.13e-01 88.5% 91.5%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 4.90e-01 100.0% 82.3%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 43.0 3.45e-01 71.2% 90.5%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 54.0 4.80e-01 100.0% 68.4%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 54.0 3.47e-01 100.0% 33.2%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.61 46.0 3.99e-01 82.7% 57.3%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.60 48.0 4.40e-01 98.1% 66.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.64e-01 100.0% 92.6%
4x83A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.38e-01 76.9% 81.4%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.44e-01 80.8% 93.5%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 42.0 2.98e-01 86.5% 96.1%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.61e-01 100.0% 87.5%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.57 44.0 4.11e-01 84.6% 69.2%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.50e-01 100.0% 96.7%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.20e-01 100.0% 24.9%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.98e-01 94.2% 67.1%
1jpcA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.56 45.0 3.65e-01 92.3% 62.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 3.44e-01 94.2% 41.4%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.57e-01 90.4% 100.0%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.56 45.0 3.09e-01 94.2% 28.5%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 38.0 3.54e-01 73.1% 62.3%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.55 46.0 3.72e-01 100.0% 60.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.34e-01 96.2% 100.0%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 44.0 4.05e-01 100.0% 67.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.23e-01 100.0% 79.2%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 44.0 3.53e-01 100.0% 70.2%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.13e-01 100.0% 25.6%
4k8wA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 48.0 3.66e-01 100.0% 81.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.29e-01 100.0% 86.2%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 37.0 2.91e-01 75.0% 91.1%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 42.0 3.17e-01 100.0% 49.1%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 44.0 2.98e-01 98.1% 35.9%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.11e-01 100.0% 29.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.20e-01 96.2% 85.7%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.53 43.0 3.31e-01 92.3% 89.7%
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.36e-01 84.6% 85.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.98e-01 100.0% 71.1%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.15e-01 100.0% 30.9%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 39.0 2.80e-01 82.7% 74.4%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 3.57e-01 100.0% 55.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.52 40.0 4.11e-01 100.0% 98.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 4.04e-01 92.3% 81.4%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.88e-01 90.4% 87.5%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 43.0 3.50e-01 100.0% 51.4%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 44.0 4.36e-01 100.0% 98.2%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 4.02e-01 100.0% 98.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 4.11e-01 96.2% 100.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.90e-01 100.0% 90.9%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.74 65.0 5.99e-01 100.0% 77.9%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.36e-01 98.1% 62.5%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.80e-01 100.0% 78.1%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.70 62.0 5.51e-01 100.0% 72.0%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.17e-01 100.0% 61.1%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 61.0 4.94e-01 100.0% 53.0%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.69e-01 98.1% 89.1%
4380236 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.68 55.0 3.81e-01 90.4% 61.6%
5015352 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.12e-01 100.0% 62.7%
2663669 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.68 55.0 3.95e-01 92.3% 70.6%
4987025 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.68 59.0 3.65e-01 96.2% 73.0%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 58.0 5.43e-01 100.0% 80.0%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 59.0 4.95e-01 100.0% 62.2%
4214438 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 57.0 5.40e-01 100.0% 78.5%
7765 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.67 55.0 4.18e-01 92.3% 89.7%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 58.0 5.10e-01 100.0% 66.7%
4554867 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 57.0 5.33e-01 100.0% 78.5%
4302391 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.66 55.0 5.16e-01 94.2% 75.4%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 57.0 5.46e-01 100.0% 85.0%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 56.0 5.23e-01 100.0% 76.9%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.65 56.0 4.70e-01 100.0% 64.2%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 55.0 5.06e-01 100.0% 72.9%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 55.0 4.93e-01 100.0% 66.7%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.65 54.0 5.00e-01 98.1% 77.1%
4998118 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.64 55.0 5.18e-01 100.0% 81.5%
4987919 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.64 53.0 5.22e-01 98.1% 89.7%
5041801 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.64 55.0 4.74e-01 100.0% 64.7%
4970510 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.63 54.0 5.09e-01 100.0% 81.5%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.71e-01 100.0% 70.0%
4939428 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.62 51.0 4.97e-01 100.0% 88.3%
5058747 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.62 50.0 4.91e-01 96.2% 87.9%
5081442 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.62 51.0 4.72e-01 100.0% 71.4%
4982571 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.62 51.0 4.98e-01 98.1% 87.9%
3799293 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 46.0 3.36e-01 100.0% 28.7%
5077594 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.61 50.0 5.01e-01 96.2% 92.7%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 49.0 4.61e-01 100.0% 73.5%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 51.0 4.63e-01 100.0% 70.7%
3840061 4991.1.1.0 ↗ extended segments › Lag-3 N-terminal region › Lag-3 N-terminal region › Lag-3 N-terminal region 0.59 47.0 2.85e-01 90.4% 13.7%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.59 51.0 4.01e-01 98.1% 49.1%
3592141 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 43.0 3.08e-01 78.8% 42.3%
4110878 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.78e-01 92.3% 100.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 3.35e-01 100.0% 35.1%
5006274 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.58 48.0 3.60e-01 100.0% 35.7%
3187813 220.1.1.204 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_24 0.57 49.0 3.89e-01 100.0% 70.4%
5067171 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.57 44.0 4.18e-01 88.5% 72.3%
4112241 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 42.0 3.75e-01 88.5% 82.4%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.56 48.0 4.32e-01 100.0% 77.3%
3793856 5.1.4.421 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.56 45.0 2.51e-01 92.3% 7.1%
3740208 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.56 46.0 4.41e-01 100.0% 87.7%
3587337 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.55 45.0 3.41e-01 100.0% 52.7%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.55 45.0 3.28e-01 100.0% 46.7%
3407855 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 44.0 3.78e-01 94.2% 54.4%
3715285 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.54 45.0 3.31e-01 100.0% 41.3%
3838132 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.53 43.0 3.64e-01 100.0% 53.6%
4568780 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 43.0 4.30e-01 100.0% 98.2%
2756608 270.1.1.0 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related 0.53 40.0 3.57e-01 84.6% 86.1%
4068291 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.53 40.0 3.92e-01 88.5% 80.0%
3740221 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.52 42.0 3.16e-01 100.0% 40.6%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.95e-01 92.3% 73.8%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.51 42.0 3.65e-01 96.2% 58.8%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 2.89e-01 100.0% 38.6%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.51 41.0 4.04e-01 96.2% 84.7%
2541236 3820.1.1.0 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain 0.50 40.0 3.47e-01 100.0% 78.1%