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MK637516.2__QBQ72075.1__Milano_053__00054

Bact-Vir

MK637516.2__QBQ72075.1__Milano_053__00054

Identity

Accession:
MK637516 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schmittlotzvirus› Agrobacterium_phage_Milano

TaxID: 2557550

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-84
PDB
D2 medium residues 89-221
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.84 51.0 6.51e-01 91.0% 100.0%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.79 56.0 6.52e-01 91.0% 100.0%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.78 58.0 5.92e-01 100.0% 78.9%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.78 60.0 6.46e-01 94.7% 93.8%
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.78 59.0 6.55e-01 91.0% 98.1%
2q5zB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.76 52.0 6.16e-01 95.5% 98.9%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.75 49.0 5.99e-01 88.7% 100.0%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.73 50.0 5.93e-01 87.2% 100.0%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.70 59.0 5.79e-01 94.0% 83.2%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.59 42.0 3.77e-01 73.7% 100.0%
5xnyA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.55 41.0 3.37e-01 76.7% 72.5%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.71e-01 70.7% 90.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3441169 159.1.1.2 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG-like 0.77 60.0 6.24e-01 94.7% 86.4%
4967507 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.64 38.0 3.74e-01 71.4% 54.5%
None — 0.62 44.0 3.74e-01 74.4% 50.7%
3799048 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 42.0 3.67e-01 70.7% 97.0%
3260679 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.61 43.0 4.05e-01 72.2% 86.2%
3238202 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 42.0 3.42e-01 71.4% 90.8%
3703366 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 41.0 3.32e-01 70.7% 78.8%
4236657 633.21.1.18 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.59 41.0 3.94e-01 72.2% 93.5%
4029228 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 40.0 3.56e-01 70.7% 82.1%
3672728 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.57 47.0 3.15e-01 91.7% 84.0%
3654968 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.56 49.0 3.35e-01 97.7% 60.4%
4016124 192.29.1.148 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF3433 0.54 39.0 3.48e-01 72.9% 87.8%
3969345 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.54 44.0 3.73e-01 86.5% 52.7%
3310916 5069.1.1.55 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 0.54 39.0 3.55e-01 73.7% 92.9%
3904532 3937.1.1.1 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.53 37.0 3.02e-01 72.2% 83.8%
3629045 601.2.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.52 37.0 3.80e-01 71.4% 80.0%
3429951 5069.1.1.55 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 0.52 38.0 3.53e-01 75.9% 93.5%
3802552 601.1.1.91 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 0.52 38.0 3.50e-01 74.4% 98.8%
3985268 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.51 43.0 3.43e-01 88.7% 81.2%
3223678 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.51 42.0 3.61e-01 85.7% 85.5%
5048217 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 44.0 3.53e-01 93.2% 49.4%