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MK672802.1__QCW19678.1__X__00024

Bact-Vir

MK672802.1__QCW19678.1__X__00024

Identity

Accession:
MK672802 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Va_90-11-286_p16

TaxID: 2565519

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.76 59.0 5.86e-01 100.0% 84.0%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.70 54.0 5.40e-01 100.0% 87.8%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 50.0 4.22e-01 100.0% 53.4%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.16e-01 100.0% 87.8%
2ikdA00 3.30.1640.30 Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › 0.51 40.0 3.85e-01 100.0% 76.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3166029 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.80 66.0 6.42e-01 100.0% 83.6%
5004560 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 65.0 6.30e-01 100.0% 83.6%
3587382 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 64.0 6.15e-01 100.0% 83.6%
4019982 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.77 63.0 5.94e-01 100.0% 75.0%
3305689 101.15.1.9 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 0.73 59.0 4.29e-01 100.0% 32.1%
3337236 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.65 56.0 5.25e-01 100.0% 85.0%
185997 6039.1.1.1 ↗ few secondary structure elements › CLIP domain › CLIP domain › CLIP domain › CLIP 0.51 40.0 3.85e-01 100.0% 76.8%