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MK672802.1__QCW19701.1__X__00047

Bact-Vir

MK672802.1__QCW19701.1__X__00047

Identity

Accession:
MK672802 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Va_90-11-286_p16

TaxID: 2565519

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-98
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00127__D21-122
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05016.22 best ParE_toxin 68.9 6.20e-19 92.7% 98.9%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cw7B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.92 85.0 8.67e-01 100.0% 97.9%
5cegD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.92 83.0 8.15e-01 93.8% 96.0%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.89 80.0 8.10e-01 94.8% 95.7%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.82 65.0 6.86e-01 91.7% 92.0%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.80 68.0 7.11e-01 94.8% 96.6%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.77 66.0 6.85e-01 95.8% 97.8%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.77 65.0 6.76e-01 92.7% 96.6%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.77 65.0 6.83e-01 97.9% 100.0%
7bwfA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.75 62.0 6.52e-01 92.7% 97.7%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 35.0 3.93e-01 91.7% 63.9%
3er0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 32.0 3.67e-01 90.6% 58.9%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.63 38.0 4.46e-01 89.6% 88.1%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 50.0 4.70e-01 94.8% 87.2%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.58 52.0 4.61e-01 100.0% 92.9%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.58 52.0 4.63e-01 100.0% 88.6%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.58 52.0 4.76e-01 100.0% 87.5%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 40.0 2.73e-01 71.9% 43.6%
4d3zA02 1.10.132.130 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 39.0 3.76e-01 70.8% 86.4%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 28.0 3.08e-01 90.6% 57.1%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 29.0 3.35e-01 90.6% 71.2%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 33.0 3.46e-01 84.4% 67.4%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 46.0 4.27e-01 95.8% 99.2%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 43.0 4.05e-01 90.6% 75.6%
4hnvB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 41.0 2.95e-01 90.6% 58.7%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 4.00e-01 97.9% 71.9%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 44.0 4.12e-01 94.8% 86.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 42.0 3.97e-01 91.7% 78.3%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 44.0 4.01e-01 100.0% 88.0%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.50 37.0 3.53e-01 79.2% 80.5%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4646165 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.96 84.0 8.74e-01 92.7% 96.7%
4089210 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.95 82.0 8.72e-01 90.6% 100.0%
1877168 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.94 85.0 8.72e-01 100.0% 97.8%
3986903 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 78.0 8.36e-01 87.5% 98.8%
1712440 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 83.0 8.08e-01 93.8% 94.2%
5052823 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 85.0 8.63e-01 97.9% 97.9%
4937857 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 72.0 7.85e-01 91.7% 96.2%
4463632 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.92 81.0 8.45e-01 91.7% 97.8%
4585524 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 80.0 8.31e-01 91.7% 97.8%
5030204 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 66.0 7.50e-01 87.5% 96.0%
3955817 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 85.0 8.45e-01 97.9% 96.9%
4402856 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 81.0 8.42e-01 93.8% 100.0%
4940748 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 72.0 7.77e-01 99.0% 96.4%
4544637 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 81.0 8.26e-01 96.9% 96.8%
2966315 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.90 80.0 8.11e-01 94.8% 94.7%
2770566 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 77.0 7.90e-01 90.6% 95.7%
5027803 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 70.0 7.64e-01 93.8% 98.8%
5075086 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.88 69.0 7.50e-01 93.8% 97.5%
5071213 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.88 68.0 7.46e-01 89.6% 96.2%
3955980 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 81.0 7.89e-01 100.0% 90.5%
4984297 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 71.0 7.33e-01 92.7% 91.1%
2834133 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.86 70.0 7.56e-01 89.6% 98.8%
4966797 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.86 69.0 7.33e-01 90.6% 94.1%
4959351 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.85 68.0 7.40e-01 97.9% 100.0%
5044967 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.85 73.0 7.57e-01 97.9% 95.6%
5080208 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 72.0 7.48e-01 97.9% 95.6%
3982278 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 74.0 7.68e-01 94.8% 100.0%
4887373 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 65.0 7.13e-01 88.5% 97.5%
4949569 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 72.0 7.47e-01 99.0% 96.7%
4967722 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 66.0 7.22e-01 96.9% 100.0%
5018712 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 72.0 7.47e-01 95.8% 96.7%
4463880 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 77.0 7.56e-01 100.0% 95.1%
5080337 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 70.0 7.25e-01 95.8% 95.5%
5065653 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.81 71.0 6.90e-01 92.7% 97.1%
4933908 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.81 65.0 6.93e-01 89.6% 95.3%
4966645 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.81 55.0 6.39e-01 90.6% 97.1%
138730 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 68.0 7.11e-01 94.8% 96.6%
4937094 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 74.0 7.27e-01 100.0% 95.0%
4937762 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.78 67.0 6.97e-01 94.8% 96.7%
169853 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.78 65.0 6.87e-01 97.9% 100.0%
5061645 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.77 50.0 6.01e-01 88.5% 100.0%
1297412 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.77 66.0 6.83e-01 95.8% 96.7%
4968449 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.77 51.0 6.03e-01 88.5% 100.0%
5029970 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.76 69.0 6.86e-01 100.0% 93.9%
3964028 4312.2.1.1 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like › TrmO_C 0.75 51.0 5.77e-01 90.6% 90.7%
5061910 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.73 54.0 6.04e-01 89.6% 100.0%
4940076 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.73 67.0 6.33e-01 100.0% 91.3%
5042309 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.72 55.0 5.67e-01 90.6% 84.4%
3276550 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.72 61.0 6.28e-01 89.6% 95.7%
3526903 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.72 62.0 6.20e-01 91.7% 88.9%
4943309 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 50.0 4.76e-01 100.0% 71.9%
5033617 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 51.0 4.70e-01 100.0% 67.2%
5003862 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 49.0 4.35e-01 100.0% 57.9%
1770995 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.61 55.0 4.31e-01 100.0% 94.1%
3620870 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 45.0 4.54e-01 99.0% 79.0%
4952060 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 35.0 4.15e-01 85.4% 95.0%
4944313 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 51.0 4.56e-01 99.0% 89.6%
4965192 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.56 46.0 4.35e-01 89.6% 90.4%
3397015 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.56 50.0 4.44e-01 100.0% 92.1%
4964835 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.54 44.0 4.22e-01 90.6% 90.4%
5053597 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 4.15e-01 100.0% 76.4%
3825338 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 4.19e-01 100.0% 82.2%
4975639 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 45.0 4.08e-01 94.8% 80.8%
3707662 223.2.1.42 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin 0.53 47.0 3.94e-01 100.0% 60.0%
5035465 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 44.0 4.18e-01 93.8% 82.6%
3281830 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 44.0 3.93e-01 93.8% 70.4%
4679943 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.52 45.0 3.83e-01 100.0% 90.3%
3173088 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.51 45.0 3.84e-01 100.0% 66.3%
5072430 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 43.0 3.91e-01 93.8% 84.6%
5041753 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 43.0 4.09e-01 95.8% 93.0%