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MK672803.1__QCW19710.1__X__00007

Bact-Vir

MK672803.1__QCW19710.1__X__00007

Identity

Accession:
MK672803 ↗
Kingdom:
phage

Quality

65.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Va_91-7-154_p41

TaxID: 2565523

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 378-473_539-548
PDB
Domain cluster: rep: MN988556.1__QIG76642.1__EVC28_018__00018__D8-93
D2 medium residues 112-154
PDB
Domain cluster: representative
D3 medium residues 170-238
PDB
Domain cluster: rep: HQ634195.1__AGN51531.1__VPLG_00092__00092__D41-101
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.89 56.0 6.71e-01 76.8% 93.8%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 52.0 5.97e-01 76.8% 88.2%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.78 50.0 5.99e-01 73.9% 100.0%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.75 61.0 5.43e-01 87.0% 68.4%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.69 53.0 5.62e-01 81.2% 100.0%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.68 50.0 5.25e-01 76.8% 87.1%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.66 57.0 5.62e-01 95.7% 89.0%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 42.0 4.31e-01 76.8% 97.0%
1x9zA01 3.30.1540.20 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain 0.56 44.0 4.00e-01 85.5% 92.5%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.53 43.0 2.99e-01 87.0% 62.0%
4n0qA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 40.0 3.15e-01 84.1% 84.6%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 40.0 3.73e-01 88.4% 81.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4444075 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.91 55.0 6.93e-01 73.9% 100.0%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 58.0 6.96e-01 81.2% 100.0%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.85 58.0 6.25e-01 76.8% 81.4%
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 55.0 6.64e-01 72.5% 100.0%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 59.0 6.40e-01 78.3% 86.2%
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.84 54.0 6.29e-01 79.7% 92.0%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.83 57.0 6.61e-01 78.3% 98.0%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 52.0 5.85e-01 76.8% 83.3%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 56.0 6.52e-01 79.7% 98.0%
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 58.0 6.49e-01 73.9% 96.4%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.81 58.0 6.57e-01 76.8% 96.2%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.81 58.0 6.30e-01 75.4% 98.3%
3976685 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.77 58.0 6.51e-01 81.2% 100.0%
4009012 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.73 52.0 5.42e-01 79.7% 81.2%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.72 58.0 6.00e-01 85.5% 92.3%
4149799 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.71 49.0 5.65e-01 73.9% 100.0%
2966957 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.71 54.0 4.87e-01 81.2% 66.3%
1002430 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.69 53.0 5.62e-01 81.2% 100.0%
8553 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.68 50.0 5.25e-01 76.8% 87.1%
4020598 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.67 41.0 2.44e-01 89.9% 8.9%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.66 48.0 4.85e-01 82.6% 79.1%
1291025 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.66 57.0 5.62e-01 95.7% 89.0%
4996605 70.3.1.12 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 0.64 46.0 4.44e-01 76.8% 96.2%
4646632 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 42.0 4.37e-01 84.1% 72.3%
2736862 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.61 45.0 4.60e-01 79.7% 80.9%
5042815 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.61 44.0 4.20e-01 75.4% 71.2%
4169889 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.60 42.0 4.18e-01 78.3% 71.4%
3934136 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.57 49.0 3.66e-01 97.1% 86.0%
5041150 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.55 37.0 3.74e-01 71.0% 71.4%
4519564 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.54 39.0 2.94e-01 78.3% 81.7%
3204269 7579.1.1.13 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH 0.54 38.0 2.60e-01 73.9% 37.6%
5051212 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.52 32.0 2.96e-01 88.4% 45.6%
4135015 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.51 31.0 2.93e-01 88.4% 45.6%
4383764 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.51 40.0 3.56e-01 91.3% 91.8%
5051587 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.51 40.0 2.75e-01 89.9% 85.9%
D4 medium residues 273-341
PDB