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MK672805.1__QCW19889.1__X__00006

Bact-Vir

MK672805.1__QCW19889.1__X__00006

Identity

Accession:
MK672805 ↗
Kingdom:
phage

Quality

73.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Va_PF430-3_p42

TaxID: 2565524

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-70
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 63.0 4.65e-01 100.0% 36.4%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 62.0 4.98e-01 100.0% 49.5%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.93e-01 98.0% 63.0%
1z4hA01 1.10.238.160 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.68 58.0 5.56e-01 100.0% 86.2%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 4.21e-01 98.0% 44.0%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.93e-01 98.0% 73.6%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.78e-01 100.0% 61.7%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.73e-01 98.0% 69.9%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.50e-01 98.0% 61.0%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 3.88e-01 100.0% 33.8%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.60e-01 96.0% 72.2%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.61 49.0 4.12e-01 100.0% 58.6%
6ocxA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 47.0 3.48e-01 100.0% 34.6%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 2.85e-01 94.0% 29.9%
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.83e-01 100.0% 58.3%
2e6wA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 39.0 3.31e-01 82.0% 90.6%
2mdgA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 29.0 2.83e-01 100.0% 45.5%
3l8aA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.11e-01 100.0% 39.7%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.51 39.0 2.81e-01 88.0% 65.7%
1m3qA02 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.50 36.0 3.21e-01 94.0% 50.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589675 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 72.0 7.30e-01 98.0% 98.0%
3589467 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.82 71.0 5.98e-01 100.0% 58.8%
4191032 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 68.0 6.83e-01 100.0% 98.0%
4375315 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 68.0 6.84e-01 96.0% 96.0%
4950846 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 69.0 6.98e-01 100.0% 100.0%
5027627 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 70.0 6.81e-01 100.0% 92.7%
3952885 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 66.0 6.67e-01 98.0% 100.0%
5007668 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 67.0 5.00e-01 100.0% 42.4%
3281256 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.76 64.0 5.63e-01 100.0% 62.5%
3486318 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 67.0 5.74e-01 100.0% 73.8%
3960483 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 63.0 6.33e-01 98.0% 98.0%
3974460 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 65.0 4.83e-01 100.0% 50.8%
2876157 101.1.9.105 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.75 66.0 6.49e-01 100.0% 98.1%
3953197 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.75 63.0 5.21e-01 100.0% 52.6%
3966276 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 63.0 4.98e-01 100.0% 47.3%
1394838 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 63.0 4.65e-01 100.0% 36.4%
5030468 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 61.0 5.12e-01 100.0% 53.3%
4031948 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 62.0 4.83e-01 100.0% 43.5%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 61.0 5.36e-01 100.0% 66.3%
4932995 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 63.0 6.34e-01 100.0% 100.0%
4974775 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 61.0 5.86e-01 100.0% 83.3%
3284505 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.72 62.0 4.79e-01 100.0% 59.1%
3975516 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 61.0 4.80e-01 98.0% 45.7%
3979434 101.1.9.101 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF1441 0.71 63.0 6.12e-01 100.0% 90.9%
1834379 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 58.0 5.35e-01 100.0% 75.8%
4682727 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.68 57.0 5.60e-01 100.0% 90.9%
3205121 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 59.0 5.04e-01 100.0% 71.2%
4970959 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.15e-01 100.0% 75.7%
4943612 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.28e-01 98.0% 42.5%
5031624 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 56.0 4.66e-01 98.0% 56.7%
4992861 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.64 56.0 4.52e-01 98.0% 53.7%
4979152 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.64 56.0 4.56e-01 100.0% 52.6%
4999062 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.64 54.0 4.45e-01 98.0% 52.6%
5077394 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.63 54.0 4.17e-01 98.0% 45.2%
3491271 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.61 53.0 4.48e-01 100.0% 58.8%
4953298 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.60 51.0 3.85e-01 100.0% 40.0%
3804069 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.59 49.0 4.11e-01 100.0% 54.7%
3358714 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 2.87e-01 100.0% 12.7%
5053312 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.02e-01 100.0% 58.9%
3808197 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.58 49.0 3.65e-01 100.0% 36.4%
4022664 189.1.1.1 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RasGAP 0.58 45.0 2.78e-01 90.0% 83.2%
3788382 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.57 50.0 4.31e-01 100.0% 72.5%
5073598 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.57 48.0 4.04e-01 100.0% 80.0%
3357775 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.56 47.0 3.98e-01 100.0% 62.2%
4979216 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.74e-01 100.0% 74.4%
4940103 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.81e-01 100.0% 67.1%
4027904 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 39.0 3.23e-01 92.0% 83.6%
5048519 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.14e-01 96.0% 86.9%