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MK672805.1__QCW19904.1__X__00021

Bact-Vir

MK672805.1__QCW19904.1__X__00021

Identity

Accession:
MK672805 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Va_PF430-3_p42

TaxID: 2565524

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-106
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06254.18 best YdaT_toxin 90.4 1.40e-25 93.1% 65.9%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4rA00 1.10.3600.10 Mainly Alpha › Orthogonal Bundle › uncharacterized protein encoded by cryptic prophage fold › Putative bacterial toxin ydaT 0.91 81.0 7.52e-01 98.0% 76.6%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.70 57.0 5.98e-01 100.0% 98.9%
2n1fA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 52.0 5.55e-01 97.1% 97.8%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 57.0 5.09e-01 97.1% 89.6%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 56.0 5.02e-01 96.1% 92.2%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 56.0 5.01e-01 97.1% 92.2%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 54.0 4.82e-01 96.1% 91.8%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 55.0 4.87e-01 97.1% 89.8%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 53.0 4.77e-01 95.1% 86.2%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 54.0 4.87e-01 97.1% 89.3%
5tkyA05 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 33.0 3.54e-01 87.3% 64.4%
2dbhA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 40.0 4.37e-01 88.2% 93.7%
1cpcA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.53 43.0 3.76e-01 91.2% 74.1%
1wyrA00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.52 36.0 3.45e-01 70.6% 85.1%
1xqoA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.52 32.0 2.98e-01 96.1% 45.9%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 33.0 3.19e-01 100.0% 56.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2984191 3524.1.1.0 ↗ alpha arrays › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage 0.91 82.0 7.51e-01 99.0% 75.6%
336314 3524.1.1.1 ↗ alpha arrays › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › YdaT_toxin 0.90 81.0 7.45e-01 99.0% 75.6%
4410099 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.62 54.0 4.91e-01 97.1% 93.6%
4394019 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.61 53.0 4.95e-01 97.1% 91.5%
3540239 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.57 46.0 4.60e-01 100.0% 85.7%
4942122 1079.1.1.12 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › GDT1 0.56 39.0 3.22e-01 71.6% 85.3%
4045754 110.1.1.18 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.53 45.0 4.53e-01 100.0% 91.4%
4248051 2007.1.19.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT 0.53 46.0 3.42e-01 100.0% 88.2%
4997392 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.53 38.0 3.47e-01 76.5% 68.6%
5017356 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.52 42.0 3.01e-01 88.2% 89.4%
3504773 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.51 42.0 3.20e-01 89.2% 70.4%
3470494 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.50 36.0 3.37e-01 76.5% 68.1%
D2 high residues 122-181
PDB
Domain cluster: representative
CATH (72)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.88 81.0 5.64e-01 100.0% 34.3%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.88 80.0 5.28e-01 100.0% 27.0%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.87 65.0 7.03e-01 85.0% 94.1%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.85 76.0 6.51e-01 98.3% 88.3%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 74.0 6.10e-01 98.3% 60.0%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.83 74.0 5.72e-01 100.0% 46.2%
6iknD01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.83 74.0 4.76e-01 100.0% 37.5%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 67.0 6.51e-01 91.7% 92.5%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 72.0 6.93e-01 100.0% 97.1%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.81 70.0 4.68e-01 98.3% 44.9%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.80 71.0 5.38e-01 100.0% 46.1%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 71.0 6.61e-01 100.0% 81.3%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.80 70.0 5.83e-01 100.0% 69.8%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 65.0 4.82e-01 91.7% 35.9%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 69.0 6.45e-01 100.0% 82.7%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 69.0 6.42e-01 100.0% 77.9%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.79 58.0 6.24e-01 80.0% 100.0%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.78 66.0 5.15e-01 100.0% 43.5%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.78 68.0 6.45e-01 98.3% 83.1%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.78 67.0 6.08e-01 98.3% 95.1%
1l8nA03 3.90.1330.10 Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain 0.77 68.0 4.66e-01 98.3% 29.3%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 66.0 5.67e-01 98.3% 63.6%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.76 59.0 5.90e-01 86.7% 83.9%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.76 65.0 5.56e-01 100.0% 61.8%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.76 64.0 5.33e-01 95.0% 53.8%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 62.0 5.34e-01 93.3% 58.2%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.75 64.0 5.25e-01 98.3% 60.3%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.75 64.0 4.49e-01 100.0% 29.5%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 55.0 5.74e-01 90.0% 87.0%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.75 66.0 4.95e-01 100.0% 46.3%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.74 63.0 5.12e-01 98.3% 63.9%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 60.0 4.66e-01 91.7% 40.7%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 65.0 6.01e-01 100.0% 82.1%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.74 59.0 5.70e-01 98.3% 79.1%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.74 61.0 4.97e-01 93.3% 50.0%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.74 52.0 5.63e-01 76.7% 97.9%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.74 60.0 4.97e-01 93.3% 51.3%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 5.77e-01 100.0% 79.5%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.74 63.0 6.06e-01 100.0% 91.5%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 54.0 5.04e-01 93.3% 64.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.72 59.0 5.22e-01 93.3% 62.6%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.72 53.0 4.74e-01 80.0% 56.3%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 58.0 5.45e-01 90.0% 74.3%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 56.0 5.51e-01 91.7% 80.0%
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 54.0 5.14e-01 88.3% 69.4%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 59.0 5.89e-01 96.7% 93.5%
4azcA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.71 48.0 4.89e-01 75.0% 72.9%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 60.0 5.58e-01 100.0% 78.5%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 58.0 4.80e-01 93.3% 50.0%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.71 50.0 5.43e-01 75.0% 100.0%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 59.0 5.19e-01 96.7% 67.7%
2q1kA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 53.0 5.59e-01 85.0% 100.0%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.70 58.0 5.07e-01 96.7% 64.9%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 56.0 4.78e-01 91.7% 54.0%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.69 61.0 5.69e-01 100.0% 79.7%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.69 59.0 4.74e-01 100.0% 48.0%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 52.0 5.16e-01 85.0% 81.2%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.69 55.0 5.16e-01 91.7% 72.4%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.68 53.0 4.88e-01 95.0% 64.3%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 52.0 4.88e-01 85.0% 66.7%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.68 53.0 5.40e-01 88.3% 93.1%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 50.0 5.43e-01 83.3% 96.0%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.68 56.0 5.19e-01 95.0% 83.3%
1ni3A03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.67 51.0 4.56e-01 85.0% 58.2%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.67 49.0 5.13e-01 85.0% 96.1%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.66 47.0 3.83e-01 76.7% 42.2%
1z5zA02 1.20.120.850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain 0.65 45.0 4.21e-01 85.0% 57.9%
2lf0A01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.65 51.0 5.14e-01 91.7% 93.3%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.65 55.0 3.98e-01 98.3% 32.2%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 51.0 4.50e-01 100.0% 72.2%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.60 44.0 3.89e-01 98.3% 54.0%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 48.0 4.95e-01 95.0% 100.0%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971109 5086.1.1.85 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AAEA_pHBA 0.91 71.0 6.55e-01 83.3% 100.0%
4798159 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.90 83.0 7.64e-01 100.0% 78.9%
3487862 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.89 81.0 5.27e-01 100.0% 25.4%
3491418 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.88 81.0 7.50e-01 100.0% 81.3%
4784164 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.87 79.0 7.51e-01 100.0% 85.7%
3965830 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.87 68.0 5.62e-01 100.0% 50.0%
3503594 192.8.1.391 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › EMC3_TMCO1 0.85 76.0 6.77e-01 100.0% 71.8%
3258925 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.85 77.0 7.30e-01 100.0% 87.1%
2323907 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.85 76.0 5.04e-01 98.3% 32.2%
3768858 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.84 75.0 6.45e-01 100.0% 63.2%
3902100 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.84 76.0 6.71e-01 100.0% 71.8%
2106300 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.84 74.0 5.86e-01 100.0% 49.2%
3855461 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.83 75.0 6.63e-01 100.0% 71.8%
3413114 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.83 67.0 6.54e-01 88.3% 81.5%
4954407 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.83 69.0 5.69e-01 93.3% 52.4%
3556027 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.83 75.0 6.62e-01 100.0% 71.8%
3382589 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.83 73.0 5.59e-01 98.3% 44.4%
222991 192.10.1.1 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › DksA_N 0.83 74.0 6.41e-01 100.0% 65.2%
3315495 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.83 73.0 6.54e-01 100.0% 80.0%
4948915 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.83 72.0 4.92e-01 98.3% 28.2%
3878000 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.82 73.0 6.25e-01 100.0% 63.2%
3849547 4992.1.1.25 ↗ extended segments › RelB-like › RelB-like › RelB-like › SHCBP_N 0.82 70.0 6.04e-01 96.7% 60.0%
3726982 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.82 72.0 6.35e-01 100.0% 67.8%
5044888 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.82 66.0 5.01e-01 88.3% 37.9%
4784166 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.82 73.0 6.95e-01 100.0% 85.7%
3585224 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.82 72.0 6.46e-01 100.0% 70.6%
3681353 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.82 72.0 6.41e-01 98.3% 70.6%
3780051 3602.1.1.0 ↗ alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.82 63.0 6.30e-01 83.3% 83.3%
3934830 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.81 71.0 6.54e-01 100.0% 76.2%
3853458 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.81 72.0 6.17e-01 100.0% 63.2%
3529043 3922.1.1.179 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › bMERB_dom 0.81 71.0 5.06e-01 100.0% 33.3%
3916497 632.8.1.17 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Rab_eff_C 0.81 71.0 5.62e-01 100.0% 48.8%
5064482 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.81 71.0 5.16e-01 100.0% 37.0%
4019922 611.4.1.0 ↗ alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like 0.81 72.0 5.10e-01 100.0% 34.9%
3401938 3602.1.1.14 ↗ alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 0.80 68.0 6.38e-01 98.3% 77.3%
437078 3713.1.1.1 ↗ alpha bundles › Small terminase central domain › Small terminase central domain › Small terminase central domain › DNA_Packaging 0.80 71.0 6.18e-01 100.0% 67.0%
3516570 192.29.1.1 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.79 69.0 6.30e-01 100.0% 76.2%
3215342 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.78 65.0 5.68e-01 100.0% 60.0%
3271624 2004.1.1.184 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.78 68.0 4.06e-01 100.0% 14.0%
4832964 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.78 67.0 5.37e-01 100.0% 48.8%
4116779 603.1.1.174 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HisKA 0.78 66.0 6.21e-01 98.3% 80.0%
3595877 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.78 67.0 5.42e-01 100.0% 50.0%
3264174 622.4.1.58 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › PF26756 0.77 63.0 5.84e-01 93.3% 70.0%
3275512 2484.8.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.77 67.0 4.33e-01 100.0% 39.3%
3297770 622.4.1.26 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.77 66.0 6.00e-01 100.0% 72.9%
3745112 3755.3.1.298 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING 0.77 67.0 5.40e-01 100.0% 64.2%
3566072 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 68.0 6.49e-01 100.0% 85.7%
3516461 603.1.1.103 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF29732 0.77 66.0 5.44e-01 100.0% 53.6%
4029165 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.77 67.0 4.02e-01 100.0% 14.5%
3596479 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.77 67.0 5.23e-01 100.0% 52.3%
3478131 109.4.1.267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CIP2A_N 0.76 64.0 3.60e-01 100.0% 7.4%
4463756 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 64.0 6.17e-01 98.3% 82.9%
3784740 3712.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.75 65.0 6.12e-01 100.0% 80.0%
5013534 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 61.0 4.59e-01 93.3% 36.8%
3589720 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 63.0 4.87e-01 100.0% 41.4%
3499259 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.74 63.0 3.61e-01 98.3% 9.8%
3606270 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.74 64.0 4.24e-01 100.0% 42.0%
3917888 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.74 63.0 5.18e-01 98.3% 53.0%
4807210 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.73 64.0 6.40e-01 98.3% 100.0%
3491651 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 64.0 4.53e-01 100.0% 33.5%
3672079 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.72 58.0 4.36e-01 88.3% 43.4%
3619577 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.72 61.0 5.40e-01 98.3% 66.7%
3393794 3922.1.1.211 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.72 61.0 4.80e-01 100.0% 46.7%
3800823 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 59.0 5.10e-01 100.0% 58.1%
3792010 604.1.1.105 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1_2 0.71 60.0 5.13e-01 100.0% 58.1%
4827920 4268.2.1.2 ↗ alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA › Rx_N 0.71 56.0 5.38e-01 91.7% 81.7%
4817720 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.70 60.0 3.87e-01 98.3% 21.2%
3733626 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.70 60.0 4.63e-01 98.3% 43.6%
3569033 3538.1.1.8 ↗ extended segments › MerF › MerF › MerF › PF28754 0.68 53.0 5.47e-01 90.0% 98.2%
3464325 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.68 52.0 4.78e-01 88.3% 62.4%