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MK675901.1__QBQ71161.1__S0112_035__00021

Bact-Vir

MK675901.1__QBQ71161.1__S0112_035__00021

Identity

Accession:
MK675901 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_phage_S0112

TaxID: 2559821

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-135_170-187
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jh6A00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.77 65.0 6.14e-01 88.2% 89.0%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.73 60.0 5.78e-01 84.9% 92.2%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.73 60.0 5.43e-01 86.2% 89.8%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 26.0 4.21e-01 75.7% 91.1%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 25.0 3.19e-01 75.7% 54.8%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 29.0 3.42e-01 77.6% 55.7%
4qakA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.66 61.0 5.82e-01 98.7% 93.0%
1wojA00 3.90.1740.10 Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily 0.65 52.0 4.63e-01 83.6% 100.0%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.64 58.0 5.46e-01 98.0% 92.9%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.58 44.0 4.77e-01 87.5% 96.8%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 46.0 4.78e-01 88.2% 99.3%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 22.0 3.06e-01 91.4% 85.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3338135 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.77 65.0 6.09e-01 87.5% 88.9%
276 264.1.1.4 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.77 65.0 6.14e-01 88.2% 89.0%
4951894 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.75 61.0 5.54e-01 84.2% 84.1%
4046553 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.75 61.0 5.88e-01 85.5% 91.2%
3698720 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.74 61.0 5.28e-01 86.2% 82.5%
4937535 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.73 60.0 5.72e-01 85.5% 92.6%
1117634 264.1.1.8 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg 0.73 60.0 5.19e-01 86.2% 80.0%
1869530 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.73 60.0 5.35e-01 86.8% 87.7%
4965442 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 58.0 5.75e-01 84.9% 96.2%
4972305 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.71 59.0 5.62e-01 87.5% 91.6%
5061864 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 56.0 5.26e-01 82.9% 87.0%
3730050 264.1.1.5 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest 0.69 62.0 5.37e-01 96.7% 87.7%
1736491 264.1.1.2 ↗ beta barrels › LigT-like › LigT-related › LigT-related › Corona_NS2A 0.68 55.0 5.64e-01 85.5% 100.0%
None — 0.65 59.0 5.66e-01 98.0% 95.4%
4956981 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.65 59.0 5.55e-01 99.3% 94.1%
5010662 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.64 59.0 5.49e-01 98.7% 92.4%
5062926 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.64 59.0 5.72e-01 98.0% 92.1%
4965540 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.62 56.0 5.29e-01 98.0% 94.6%
5009170 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 30.0 4.16e-01 85.5% 93.3%
3495739 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.60 46.0 4.72e-01 86.8% 83.4%
3315068 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 47.0 4.75e-01 86.8% 100.0%
4459163 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 32.0 3.47e-01 81.6% 64.0%
4514268 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 31.0 3.85e-01 82.2% 89.9%
4990154 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 39.0 4.49e-01 83.6% 100.0%