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MK685667.1__QBZ68943.1__X__00044

Bact-Vir

MK685667.1__QBZ68943.1__X__00044

Identity

Accession:
MK685667 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bimevirus› Klebsiella_phage_vB_KpnM_IME346

TaxID: 2562174

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-53
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.64 56.0 4.51e-01 100.0% 60.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 5.23e-01 100.0% 83.9%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 53.0 4.94e-01 100.0% 88.7%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 5.32e-01 100.0% 98.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.97e-01 100.0% 81.4%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.00e-01 100.0% 45.5%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.70e-01 100.0% 87.1%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.60 51.0 4.15e-01 100.0% 62.9%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 37.0 3.19e-01 83.3% 42.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.56 46.0 4.24e-01 100.0% 80.6%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 43.0 2.92e-01 95.8% 30.7%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.32e-01 93.8% 94.3%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 2.66e-01 95.8% 20.8%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 3.18e-01 87.5% 75.7%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 45.0 3.66e-01 100.0% 61.1%
2i1sA00 3.10.290.30 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like 0.52 42.0 2.86e-01 100.0% 24.7%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.52 42.0 3.40e-01 100.0% 56.0%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 40.0 3.29e-01 91.7% 81.2%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 3.11e-01 89.6% 74.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.36e-01 100.0% 47.1%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.18e-01 100.0% 74.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 56.0 4.77e-01 100.0% 57.5%
3389177 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 56.0 4.41e-01 100.0% 46.0%
3535278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.17e-01 100.0% 76.7%
5067286 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 54.0 4.52e-01 100.0% 52.8%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 54.0 4.41e-01 100.0% 51.1%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.68e-01 100.0% 65.7%
3541241 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.63 51.0 4.86e-01 100.0% 76.7%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.62 52.0 4.23e-01 100.0% 61.6%
3181766 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.61 51.0 4.53e-01 100.0% 68.0%
4403216 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.61 51.0 4.63e-01 100.0% 72.9%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 3.50e-01 100.0% 40.0%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.52e-01 100.0% 81.0%
4026957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.53e-01 100.0% 78.3%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.56 47.0 4.25e-01 100.0% 75.7%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.25e-01 100.0% 78.3%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.54 44.0 4.12e-01 100.0% 75.4%
3964944 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.54 43.0 3.29e-01 100.0% 40.7%
4011618 2.1.1.194 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Mit_ribos_Mrp51 0.54 46.0 3.67e-01 95.8% 72.4%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.95e-01 100.0% 68.6%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 4.01e-01 100.0% 78.1%
3701091 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.01e-01 93.8% 79.4%
3825960 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.53 43.0 4.42e-01 100.0% 100.0%
5058457 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.52 40.0 3.84e-01 97.9% 76.9%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.69e-01 100.0% 95.0%
3539509 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.52 40.0 2.59e-01 93.8% 52.5%
3916047 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.51 41.0 2.96e-01 97.9% 30.9%
3384708 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.51 42.0 2.77e-01 100.0% 38.2%
3926624 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.50 41.0 4.11e-01 100.0% 96.0%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.50 37.0 2.45e-01 93.8% 50.7%
3800816 221.14.1.0 ↗ a+b two layers › beta-Grasp › TAR DNA-binding protein 43 N-terminal domain › TAR DNA-binding protein 43 N-terminal domain 0.50 36.0 3.15e-01 79.2% 48.8%