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MK686071.1__QBZ73504.1__SEA_MISCHIEF19_19__00019
Bact-VirMK686071.1__QBZ73504.1__SEA_MISCHIEF19_19__00019
Identity
- Accession:
- MK686071 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Taxonomy
TaxID: 2562344
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-56
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.73 | 50.0 | 3.09e-01 | 72.1% | 19.5% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.71 | 53.0 | 4.59e-01 | 83.7% | 71.8% |
| 5wrtB00 | 3.90.80.10 | Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase | 0.66 | 48.0 | 3.01e-01 | 79.1% | 59.1% |
| 3i3lA02 | 3.30.390.160 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.66 | 47.0 | 3.46e-01 | 79.1% | 31.2% |
| 7rkbA01 | 3.90.420.10 | Alpha Beta › Alpha-Beta Complex › Sulfite Oxidase; Chain A, domain 2 › Oxidoreductase, molybdopterin-binding domain | 0.66 | 49.0 | 3.60e-01 | 86.0% | 63.2% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 45.0 | 3.03e-01 | 72.1% | 55.3% |
| 8gjaD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 47.0 | 2.90e-01 | 81.4% | 18.1% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.64 | 46.0 | 2.82e-01 | 79.1% | 33.6% |
| 1jjfA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.64 | 51.0 | 3.21e-01 | 90.7% | 23.9% |
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 40.0 | 3.37e-01 | 74.4% | 33.3% |
| 2uz0A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 44.0 | 2.82e-01 | 81.4% | 18.6% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.60 | 41.0 | 4.13e-01 | 72.1% | 77.3% |
| 3lltA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 43.0 | 2.69e-01 | 76.7% | 53.6% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.60 | 43.0 | 2.90e-01 | 79.1% | 71.1% |
| 7x4qA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 44.0 | 3.21e-01 | 90.7% | 80.8% |
| 1t4lB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 45.0 | 3.72e-01 | 93.0% | 72.2% |
| 1qwoA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.58 | 46.0 | 2.79e-01 | 100.0% | 22.8% |
| 2z17A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 45.0 | 3.67e-01 | 93.0% | 74.5% |
| 1eigA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 45.0 | 3.91e-01 | 95.3% | 64.4% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.57 | 42.0 | 2.73e-01 | 90.7% | 53.7% |
| 6qm7A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 45.0 | 2.96e-01 | 100.0% | 76.2% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 44.0 | 3.89e-01 | 90.7% | 80.3% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.56 | 38.0 | 3.10e-01 | 74.4% | 37.0% |
| 4ywzB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.09e-01 | 88.4% | 89.0% |
| 2oa9B02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.55 | 43.0 | 3.24e-01 | 95.3% | 76.4% |
| 4ntqA00 | 3.10.380.20 | Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain | 0.55 | 43.0 | 3.69e-01 | 93.0% | 81.6% |
| 4bc3A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 42.0 | 2.70e-01 | 86.0% | 19.7% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 46.0 | 3.23e-01 | 100.0% | 55.5% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 40.0 | 3.57e-01 | 90.7% | 94.5% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.54 | 45.0 | 2.83e-01 | 95.3% | 76.6% |
| 3lm4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 41.0 | 2.98e-01 | 86.0% | 27.9% |
| 2awnC02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 41.0 | 3.55e-01 | 90.7% | 80.8% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 44.0 | 3.98e-01 | 100.0% | 79.0% |
| 1fl7D00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.52 | 41.0 | 3.10e-01 | 88.4% | 39.6% |
| 2ei0A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 39.0 | 2.81e-01 | 90.7% | 25.0% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 38.0 | 2.79e-01 | 86.0% | 97.9% |
| 1v5vA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.52 | 35.0 | 2.87e-01 | 72.1% | 38.0% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 39.0 | 3.47e-01 | 90.7% | 81.9% |
| 3i6eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 38.0 | 3.05e-01 | 88.4% | 92.2% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.51 | 37.0 | 3.59e-01 | 83.7% | 96.2% |
| 3og5A01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.50 | 34.0 | 2.90e-01 | 72.1% | 44.7% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 39.0 | 2.99e-01 | 100.0% | 81.7% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3700010 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 54.0 | 3.35e-01 | 90.7% | 38.2% |
| 3266046 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.69 | 51.0 | 4.62e-01 | 81.4% | 73.3% |
| 4947515 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 50.0 | 4.49e-01 | 88.4% | 56.7% |
| 3633684 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.68 | 54.0 | 3.20e-01 | 95.3% | 24.6% |
| 3376271 | 64.1.1.8 ↗ | beta meanders › WW domain-like › WW domain › WW domain › DUF7028 | 0.68 | 57.0 | 4.58e-01 | 95.3% | 50.6% |
| 3583825 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.67 | 53.0 | 3.89e-01 | 93.0% | 53.1% |
| 3316780 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.67 | 53.0 | 4.90e-01 | 95.3% | 85.0% |
| 3809173 | 252.3.1.2 ↗ | a+b two layers › DNA-binding domain › Uncharacterized protein yaiA › Uncharacterized protein yaiA › DUF7028 | 0.67 | 55.0 | 5.16e-01 | 95.3% | 74.5% |
| 3656139 | 64.1.1.8 ↗ | beta meanders › WW domain-like › WW domain › WW domain › DUF7028 | 0.66 | 55.0 | 5.00e-01 | 95.3% | 68.3% |
| 4931302 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.66 | 51.0 | 4.85e-01 | 83.7% | 84.0% |
| 3883088 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.65 | 52.0 | 4.59e-01 | 95.3% | 97.1% |
| 3456692 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.65 | 49.0 | 4.49e-01 | 86.0% | 72.9% |
| 4966375 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 53.0 | 3.03e-01 | 100.0% | 12.3% |
| 4022213 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.64 | 54.0 | 3.04e-01 | 97.7% | 12.4% |
| 3615178 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 45.0 | 2.96e-01 | 79.1% | 17.3% |
| 3734654 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.63 | 48.0 | 3.61e-01 | 90.7% | 77.6% |
| 3310407 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.62 | 52.0 | 5.03e-01 | 95.3% | 82.0% |
| 4061056 | 2004.1.1.100 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 | 0.62 | 45.0 | 3.07e-01 | 81.4% | 46.7% |
| 3283031 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.62 | 41.0 | 3.23e-01 | 88.4% | 31.6% |
| 3283925 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.61 | 46.0 | 2.94e-01 | 86.0% | 26.7% |
| 4993051 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.60 | 49.0 | 2.80e-01 | 100.0% | 10.9% |
| 3671627 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.59 | 47.0 | 2.95e-01 | 88.4% | 70.3% |
| 3322023 | 64.1.1.8 ↗ | beta meanders › WW domain-like › WW domain › WW domain › DUF7028 | 0.59 | 47.0 | 4.44e-01 | 97.7% | 74.5% |
| 4985494 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.59 | 45.0 | 2.68e-01 | 100.0% | 11.8% |
| 3610335 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.58 | 48.0 | 3.06e-01 | 95.3% | 64.7% |
| 5024426 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.57 | 41.0 | 2.59e-01 | 79.1% | 42.1% |
| 3618003 | 389.1.1.112 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29137 | 0.57 | 42.0 | 3.98e-01 | 83.7% | 89.1% |
| 3590398 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.57 | 46.0 | 2.60e-01 | 100.0% | 9.7% |
| 4944869 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 41.0 | 3.06e-01 | 81.4% | 32.3% |
| 3448973 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.55 | 44.0 | 3.80e-01 | 100.0% | 66.3% |
| 4951973 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 43.0 | 4.05e-01 | 88.4% | 87.3% |
| None | — | 0.55 | 37.0 | 2.52e-01 | 72.1% | 15.5% | |
| 5047074 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.55 | 42.0 | 2.60e-01 | 100.0% | 14.6% |
| 3221919 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.55 | 45.0 | 2.63e-01 | 93.0% | 10.8% |
| 3486876 | 5048.1.1.7 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › DUF389 | 0.55 | 37.0 | 2.38e-01 | 72.1% | 17.9% |
| 3952449 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.55 | 43.0 | 3.38e-01 | 97.7% | 80.9% |
| 3489982 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 40.0 | 2.58e-01 | 81.4% | 50.4% |
| 4011441 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.54 | 43.0 | 2.52e-01 | 90.7% | 28.0% |
| 3670347 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.54 | 40.0 | 3.42e-01 | 86.0% | 82.3% |
| 4957121 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 39.0 | 3.63e-01 | 86.0% | 67.7% |
| 3520951 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 40.0 | 3.40e-01 | 93.0% | 62.2% |
| 3196489 | 328.7.1.1 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain › Smr | 0.53 | 37.0 | 2.84e-01 | 74.4% | 29.1% |
| 3627036 | 223.1.1.98 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 | 0.53 | 37.0 | 3.02e-01 | 76.7% | 42.0% |
| 3626043 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 44.0 | 2.68e-01 | 100.0% | 50.0% |
| 3289101 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 40.0 | 3.90e-01 | 86.0% | 82.0% |
| 3612373 | 109.4.1.438 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CHAT | 0.51 | 40.0 | 2.70e-01 | 100.0% | 75.5% |
| 4316044 | 101.1.2.388 ↗ | alpha arrays › HTH › HTH › winged helix domain › YjhX_toxin | 0.51 | 43.0 | 3.49e-01 | 100.0% | 72.2% |
| 3830297 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.51 | 42.0 | 2.52e-01 | 97.7% | 22.0% |
| 3349428 | 1.1.1.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N | 0.50 | 38.0 | 2.36e-01 | 90.7% | 15.6% |
D2
high
residues 69-228
Domain cluster:
rep: KU530220.1__AMD42760.1__SEA_XKCD426_19__00019__D344-501