←Back to structures

MK686071.1__QBZ73547.1__SEA_MISCHIEF19_62__00062

Bact-Vir

MK686071.1__QBZ73547.1__SEA_MISCHIEF19_62__00062

Identity

Accession:
MK686071 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Woodruffvirus› Streptomyces_phage_Mischief19

TaxID: 2562344

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-95
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.53e-01 83.1% 98.3%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.61 42.0 3.24e-01 71.9% 51.9%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.23e-01 75.3% 90.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.64e-01 82.0% 97.4%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 4.16e-01 84.3% 100.0%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 43.0 3.93e-01 84.3% 77.4%
4lg9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.08e-01 91.0% 92.9%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 49.0 3.31e-01 97.8% 91.7%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 43.0 3.49e-01 85.4% 94.3%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.07e-01 74.2% 95.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.55 43.0 4.64e-01 92.1% 98.7%
1gxrA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 3.04e-01 91.0% 69.9%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.30e-01 71.9% 58.6%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.94e-01 91.0% 96.1%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.06e-01 93.3% 77.7%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.96e-01 92.1% 81.2%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 38.0 3.45e-01 76.4% 100.0%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 42.0 2.90e-01 86.5% 82.8%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.96e-01 91.0% 86.8%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 42.0 2.76e-01 86.5% 94.1%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 3.90e-01 73.0% 95.5%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.78e-01 94.4% 91.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.81e-01 83.1% 90.0%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 46.0 3.09e-01 100.0% 84.3%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.79e-01 88.8% 76.4%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 44.0 3.77e-01 97.8% 77.9%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.51 39.0 3.77e-01 84.3% 81.7%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.99e-01 95.5% 81.0%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.94e-01 91.0% 93.0%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.98e-01 94.4% 88.5%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.68e-01 91.0% 88.1%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.81e-01 91.0% 80.9%
3jbtA06 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.89e-01 91.0% 92.9%
1a0rB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.76e-01 88.8% 57.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4327595 4.1.1.402 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2761 0.70 48.0 4.77e-01 71.9% 81.1%
3586469 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.66 45.0 4.65e-01 70.8% 82.4%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.52e-01 87.6% 72.9%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 44.0 4.89e-01 77.5% 96.9%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 5.23e-01 88.8% 97.3%
3676844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.94e-01 76.4% 92.0%
3423337 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 48.0 4.99e-01 82.0% 91.3%
3509246 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.62 44.0 3.74e-01 75.3% 84.0%
2831843 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.31e-01 95.5% 67.3%
3824346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.84e-01 82.0% 92.5%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 42.0 4.71e-01 83.1% 100.0%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 43.0 4.60e-01 76.4% 92.0%
858452 4.1.1.476 ↗ beta barrels › SH3 › SH3 › SH3 › PF30873 0.59 41.0 4.00e-01 89.9% 65.6%
3372243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.75e-01 91.0% 93.8%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 44.0 4.08e-01 100.0% 62.6%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 41.0 4.52e-01 76.4% 98.5%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.58 39.0 3.16e-01 70.8% 36.1%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 38.0 4.10e-01 87.6% 81.3%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.12e-01 85.4% 81.3%
3622389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 37.0 4.18e-01 70.8% 90.8%
3797642 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 3.96e-01 100.0% 53.5%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 41.0 4.41e-01 94.4% 93.3%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.56 40.0 3.84e-01 94.4% 63.8%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.56 41.0 4.40e-01 82.0% 93.3%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.56 43.0 4.63e-01 93.3% 98.7%
4944045 4.17.1.2 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.55 40.0 4.40e-01 77.5% 98.6%
3409299 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.55 40.0 4.25e-01 97.8% 87.5%
3597395 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.68e-01 93.3% 44.4%
3264116 5.1.5.76 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.55 44.0 2.90e-01 85.4% 84.6%
3359029 5.1.4.259 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz 0.54 44.0 3.09e-01 86.5% 84.4%
3498476 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.45e-01 84.3% 85.1%
3782038 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 46.0 4.50e-01 100.0% 98.0%
3646105 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 46.0 2.89e-01 95.5% 57.7%
3643255 5.1.4.222 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 0.53 43.0 2.87e-01 88.8% 80.3%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 3.83e-01 86.5% 94.2%
3179728 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 41.0 2.74e-01 84.3% 88.6%
None — 0.52 44.0 2.85e-01 91.0% 73.0%
5082111 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.52 43.0 2.85e-01 89.9% 60.3%
None — 0.52 43.0 2.98e-01 91.0% 93.0%
1169089 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.51 43.0 2.93e-01 89.9% 77.3%
3997431 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.84e-01 94.4% 67.4%
3475704 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.82e-01 89.9% 63.9%
4124150 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.51 42.0 2.78e-01 93.3% 79.5%
185635 4.1.1.391 ↗ beta barrels › SH3 › SH3 › SH3 › FDF, PF30873 0.51 42.0 3.81e-01 92.1% 76.0%
None — 0.51 39.0 2.60e-01 83.1% 89.1%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 42.0 4.13e-01 91.0% 92.6%