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MK689364.1__QBZ70633.1__pETSU_052__00052

Bact-Vir

MK689364.1__QBZ70633.1__pETSU_052__00052

Identity

Accession:
MK689364 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-62
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 39.0 3.73e-01 96.2% 48.4%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 42.0 4.06e-01 98.1% 61.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.29e-01 100.0% 81.1%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 46.0 3.97e-01 88.7% 75.6%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 3.98e-01 100.0% 71.2%
6iw6B01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.58 50.0 3.36e-01 100.0% 27.5%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 3.78e-01 100.0% 58.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.05e-01 100.0% 73.2%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.04e-01 96.2% 82.6%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.57 44.0 3.52e-01 84.9% 69.7%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 48.0 4.00e-01 98.1% 75.5%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.57 46.0 3.91e-01 100.0% 60.2%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.56 44.0 3.24e-01 86.8% 78.3%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.55 37.0 3.68e-01 98.1% 65.5%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 45.0 3.87e-01 98.1% 69.5%
2p1wA01 3.30.2430.10 Alpha Beta › 2-Layer Sandwich › Phosphothreonine lyase fold › phosphothreonine lyase 0.55 40.0 2.77e-01 100.0% 23.2%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 3.83e-01 100.0% 85.1%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.75e-01 86.8% 88.9%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.58e-01 100.0% 86.2%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.53e-01 88.7% 96.8%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.37e-01 100.0% 94.9%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 45.0 4.16e-01 100.0% 95.8%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 44.0 4.47e-01 98.1% 100.0%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.49e-01 96.2% 52.9%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 3.96e-01 100.0% 80.0%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 44.0 3.79e-01 100.0% 81.3%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 40.0 3.80e-01 100.0% 71.6%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.17e-01 100.0% 94.6%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 44.0 3.45e-01 100.0% 59.0%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.52 42.0 3.48e-01 98.1% 78.3%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 38.0 3.77e-01 100.0% 81.8%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.77e-01 100.0% 79.7%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 3.84e-01 100.0% 82.8%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 42.0 4.02e-01 100.0% 77.8%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 31.0 3.02e-01 90.6% 47.7%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 3.23e-01 98.1% 94.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.89e-01 96.2% 76.9%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 33.0 3.46e-01 98.1% 80.4%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 42.0 3.33e-01 96.2% 80.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927636 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 45.0 4.96e-01 100.0% 97.5%
5035450 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.09e-01 94.3% 48.4%
4025894 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 48.0 3.85e-01 90.6% 41.3%
4966836 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 45.0 4.45e-01 100.0% 74.5%
3423257 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.62 51.0 3.17e-01 100.0% 17.2%
4948153 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 42.0 3.87e-01 92.5% 52.9%
3623599 377.1.1.83 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.62 40.0 4.46e-01 92.5% 100.0%
3856612 319.1.1.9 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DPCD 0.62 43.0 3.06e-01 94.3% 21.6%
3646226 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.61 43.0 3.84e-01 100.0% 50.0%
3247046 377.1.1.83 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.60 41.0 4.44e-01 100.0% 95.0%
4933213 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.59 43.0 3.94e-01 100.0% 58.6%
3673863 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.59 42.0 3.69e-01 100.0% 50.0%
4972400 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.64e-01 100.0% 95.6%
4028407 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.59 45.0 3.48e-01 96.2% 37.5%
3392762 377.1.1.83 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.58 38.0 4.14e-01 92.5% 100.0%
3028388 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.58 44.0 3.99e-01 94.3% 61.1%
3446031 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.58 48.0 3.35e-01 100.0% 60.0%
4943339 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 48.0 4.04e-01 98.1% 77.0%
3317544 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.58 35.0 3.37e-01 90.6% 47.7%
4627523 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.58 43.0 3.85e-01 100.0% 56.0%
3729161 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.58 42.0 3.59e-01 100.0% 46.7%
3890922 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.57 46.0 3.86e-01 96.2% 76.2%
3992062 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.16e-01 100.0% 36.4%
4937515 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.57 47.0 4.00e-01 94.3% 83.3%
5061180 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.57 48.0 4.03e-01 98.1% 80.0%
5005811 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.57 42.0 3.79e-01 100.0% 56.2%
3190226 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 3.56e-01 92.5% 42.0%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 39.0 3.89e-01 94.3% 72.7%
3356611 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.56 44.0 4.37e-01 98.1% 83.6%
3276239 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 46.0 3.51e-01 100.0% 84.7%
5014476 241.1.1.28 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF4268 0.55 46.0 3.44e-01 96.2% 85.5%
3935130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.88e-01 100.0% 72.7%
3263503 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.55 48.0 4.30e-01 100.0% 93.3%
5052436 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 42.0 3.79e-01 88.7% 57.5%
4024746 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 46.0 3.10e-01 100.0% 60.0%
3268906 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 44.0 3.77e-01 100.0% 55.1%
5014374 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.54 46.0 2.70e-01 100.0% 21.3%
4203984 101.8.1.1 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.54 46.0 2.70e-01 100.0% 21.3%
3251763 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.54 47.0 2.87e-01 100.0% 20.9%
4269256 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.54 35.0 3.46e-01 100.0% 60.0%
3633434 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 3.81e-01 100.0% 67.1%
3494671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 32.0 3.44e-01 98.1% 68.9%
3235272 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.53 45.0 2.88e-01 98.1% 26.4%
3352485 2007.5.1.17 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.53 41.0 2.72e-01 90.6% 21.2%
3620138 3246.1.1.4 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.52 42.0 3.60e-01 100.0% 53.0%
3645679 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 35.0 3.00e-01 71.7% 44.0%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.52 42.0 2.44e-01 96.2% 9.7%
4171510 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 39.0 3.55e-01 100.0% 58.7%
3178364 319.1.1.19 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 0.52 42.0 3.47e-01 94.3% 87.6%
3580264 366.1.1.8 few secondary structure elements › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › ADAMTS_CR_3 0.52 42.0 3.56e-01 100.0% 53.0%
5042295 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.51 42.0 3.68e-01 100.0% 84.4%
4965524 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 31.0 3.17e-01 98.1% 58.2%
3742644 5.1.4.342 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EDC4L 0.51 40.0 2.50e-01 96.2% 33.8%
3170424 319.1.1.19 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29696 0.50 37.0 3.28e-01 96.2% 50.0%
5055957 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.50 40.0 3.27e-01 98.1% 93.3%
3223920 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 37.0 3.44e-01 84.9% 64.0%
D2 high residues 66-171
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 31.0 3.68e-01 97.2% 60.8%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 28.0 3.85e-01 98.1% 93.6%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 35.0 3.69e-01 94.3% 71.0%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 33.0 3.03e-01 100.0% 47.4%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 33.0 3.94e-01 82.1% 100.0%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 3.22e-01 100.0% 55.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943092 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.72 37.0 3.42e-01 98.1% 39.3%
4993868 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 34.0 3.98e-01 100.0% 72.6%
5049530 319.1.1.23 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.63 35.0 3.74e-01 100.0% 62.2%
4932472 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 33.0 3.49e-01 97.2% 60.0%
4937869 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.58 40.0 4.36e-01 95.3% 88.2%
3977677 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 28.0 3.63e-01 100.0% 90.9%
3396193 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 30.0 2.80e-01 82.1% 43.8%
4293664 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 34.0 3.16e-01 100.0% 52.6%
3676350 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 33.0 3.35e-01 99.1% 66.7%