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MK689364.1__QBZ70747.1__pETSU_166__00166

Bact-Vir

MK689364.1__QBZ70747.1__pETSU_166__00166

Identity

Accession:
MK689364 ↗
Kingdom:
phage

Quality

73.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Petsuvirus› Edwardsiella_phage_pEt-SU

TaxID: 2562142

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-70
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.74 56.0 5.89e-01 87.1% 88.9%
1z8fA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 48.0 4.02e-01 77.1% 87.6%
6xehA01 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 51.0 4.40e-01 84.3% 94.6%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.65 50.0 4.24e-01 84.3% 61.5%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 39.0 4.06e-01 77.1% 64.2%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.63 49.0 4.77e-01 87.1% 87.7%
3b40A02 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.63 33.0 3.59e-01 84.3% 60.3%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 40.0 3.86e-01 71.4% 73.4%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 45.0 4.22e-01 87.1% 83.0%
6b8hO01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.56 38.0 3.40e-01 88.6% 49.5%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.55 43.0 3.89e-01 85.7% 96.9%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.54 40.0 4.19e-01 81.4% 96.6%
6w6jD01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.53 39.0 3.30e-01 82.9% 84.7%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.53 39.0 3.61e-01 78.6% 70.5%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.52 39.0 4.22e-01 81.4% 93.4%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.50 39.0 4.08e-01 85.7% 95.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3309800 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.73 56.0 5.56e-01 91.4% 80.0%
4936966 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 56.0 5.62e-01 100.0% 95.7%
4957947 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.64 46.0 4.95e-01 81.4% 98.2%
5074271 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.56 42.0 3.02e-01 82.9% 30.6%
3990494 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.54 37.0 3.56e-01 72.9% 62.4%
3925233 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 40.0 4.14e-01 82.9% 96.9%
5045219 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 40.0 3.24e-01 84.3% 73.3%
D2 medium residues 71-129
PDB