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MK719737.1__QCQ62927.1__Barba23A_gp115__00115

Bact-Vir

MK719737.1__QCQ62927.1__Barba23A_gp115__00115

Identity

Accession:
MK719737 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-98_341-369
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13808.12 best DDE_Tnp_1_assoc 110.9 3.60e-32 70.4% 98.9%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 25.0 3.32e-01 76.8% 71.6%
1c20A00 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.56 38.0 3.84e-01 70.4% 72.7%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 38.0 3.64e-01 76.8% 72.8%
5bovB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 3.25e-01 89.6% 96.0%
1dm1A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 37.0 3.59e-01 76.8% 69.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009433 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.96 88.0 6.01e-01 95.2% 99.5%
4010407 101.1.5.4 alpha arrays › HTH › HTH › Anti-sigma factor AsiA › DDE_Tnp_1_assoc 0.93 65.0 7.71e-01 72.0% 100.0%
4008545 101.1.1.271 alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_1_assoc 0.92 67.0 7.69e-01 74.4% 97.9%
3961876 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 73.0 5.12e-01 87.2% 100.0%
4248295 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 76.0 5.21e-01 89.6% 100.0%
3954386 101.1.1.248 alpha arrays › HTH › HTH › Three-helical HTH › DUF772 0.78 58.0 6.01e-01 76.8% 87.0%
4125245 101.1.2.813 alpha arrays › HTH › HTH › winged helix domain › DUF772 0.69 54.0 5.75e-01 100.0% 94.5%
4966198 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.64 59.0 4.64e-01 99.2% 98.0%
4948364 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.54 40.0 2.71e-01 80.0% 97.3%
D2 high residues 200-290
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.90 52.0 6.51e-01 72.5% 91.5%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.80 47.0 5.56e-01 73.6% 84.1%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.80 48.0 5.97e-01 72.5% 98.2%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.76 44.0 4.23e-01 72.5% 51.5%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.72 56.0 5.01e-01 81.3% 100.0%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.66 51.0 3.88e-01 82.4% 35.2%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.66 51.0 4.39e-01 81.3% 60.3%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 43.0 3.97e-01 70.3% 52.1%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.65 50.0 4.23e-01 81.3% 55.8%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.65 50.0 4.16e-01 80.2% 66.2%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.62 43.0 3.61e-01 72.5% 91.5%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.62 46.0 3.89e-01 79.1% 68.9%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 47.0 4.15e-01 82.4% 78.8%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 41.0 4.10e-01 71.4% 97.9%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 4.00e-01 91.2% 54.0%
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 40.0 4.22e-01 70.3% 92.9%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.59 46.0 3.71e-01 82.4% 71.5%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 44.0 4.06e-01 86.8% 62.3%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 40.0 4.27e-01 75.8% 80.2%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.77e-01 71.4% 100.0%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.58 46.0 4.11e-01 83.5% 95.2%
3bp1A02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.58 40.0 3.52e-01 71.4% 88.7%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.57 46.0 3.28e-01 90.1% 90.1%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 38.0 3.94e-01 92.3% 73.8%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 3.91e-01 97.8% 65.3%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 45.0 3.10e-01 86.8% 45.7%
4jdzA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 3.43e-01 78.0% 87.9%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.56 43.0 3.27e-01 82.4% 85.1%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.55 38.0 3.49e-01 71.4% 59.7%
1q40D00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.85e-01 96.7% 69.7%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.55 45.0 3.56e-01 93.4% 41.9%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.54 45.0 3.06e-01 87.9% 82.1%
6ihjC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.82e-01 94.5% 64.3%
1qppA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.87e-01 84.6% 64.9%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.54 44.0 3.34e-01 90.1% 76.3%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 43.0 2.91e-01 86.8% 89.5%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 39.0 3.11e-01 75.8% 82.3%
1f6fB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.62e-01 70.3% 80.4%
2fauA02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.63e-01 83.5% 93.4%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.40e-01 79.1% 64.4%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.57e-01 89.0% 77.6%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.35e-01 81.3% 64.4%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 35.0 3.64e-01 73.6% 70.9%
3tesA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.27e-01 83.5% 60.6%
3zkbI02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 40.0 3.30e-01 83.5% 86.3%
1p1jA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 35.0 3.27e-01 71.4% 97.4%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.50 40.0 3.50e-01 90.1% 57.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009433 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 85.0 5.45e-01 100.0% 26.2%
4248295 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 83.0 5.39e-01 100.0% 27.6%
5022112 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.70 56.0 4.37e-01 85.7% 52.6%
3614913 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.69 53.0 5.46e-01 83.5% 85.9%
3481176 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 53.0 3.41e-01 90.1% 32.8%
3896422 216.1.1.25 a+b two layers › UBC-like › UBC-like › UBC-like › PF31022 0.65 47.0 3.67e-01 75.8% 38.9%
3196340 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.65 52.0 3.91e-01 85.7% 46.5%
3970764 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.64 49.0 4.04e-01 82.4% 59.4%
3518469 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.62 45.0 4.03e-01 75.8% 54.6%
2582184 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.62 44.0 3.07e-01 72.5% 31.2%
3947636 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.62 44.0 2.75e-01 73.6% 22.8%
3674091 9.23.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.62 44.0 3.38e-01 73.6% 37.9%
5055339 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.61 39.0 2.82e-01 70.3% 21.9%
3550298 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.61 50.0 4.05e-01 90.1% 55.0%
5030840 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 3.82e-01 71.4% 97.6%
3952882 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.60 50.0 4.09e-01 91.2% 62.1%
5042182 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.60 45.0 4.37e-01 84.6% 72.0%
3363098 295.1.1.5 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly 0.60 47.0 4.50e-01 83.5% 73.3%
3273857 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.60 45.0 3.91e-01 79.1% 81.9%
3281686 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.59 49.0 4.02e-01 90.1% 61.2%
4044109 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.59 49.0 3.26e-01 89.0% 92.6%
3616754 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 3.61e-01 73.6% 85.0%
4367390 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.59 44.0 2.78e-01 79.1% 92.1%
3492507 5.1.4.13 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.58 52.0 3.21e-01 100.0% 27.1%
5038819 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 54.0 3.84e-01 98.9% 96.4%
3829251 9.1.1.34 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.58 47.0 3.84e-01 89.0% 68.6%
3967083 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 41.0 4.10e-01 74.7% 70.5%
3915023 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.58 48.0 4.18e-01 89.0% 63.0%
4177430 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.58 45.0 3.81e-01 85.7% 50.7%
1146564 11.1.1.183 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4426 0.57 43.0 3.88e-01 78.0% 95.0%
6758 298.1.1.15 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.56 39.0 2.84e-01 71.4% 97.4%
3759783 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.38e-01 95.6% 92.3%
3287036 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.56 46.0 3.80e-01 91.2% 62.4%
4219518 63.1.1.5 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › ATG27 0.56 45.0 3.69e-01 85.7% 85.0%
1401858 71.1.1.6 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.55 45.0 3.56e-01 93.4% 41.9%
4004197 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.48e-01 72.5% 84.0%
3410461 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 3.01e-01 89.0% 27.9%
3553322 5089.1.1.3 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin 0.55 44.0 3.38e-01 92.3% 79.2%
3288669 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.55 44.0 3.76e-01 91.2% 61.3%
3743296 883.1.1.20 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like 0.54 44.0 3.44e-01 90.1% 81.0%
2611886 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.74e-01 84.6% 71.1%
5037934 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 3.13e-01 94.5% 74.2%
4303181 7504.1.1.1 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.53 42.0 3.26e-01 84.6% 67.3%
5043857 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.30e-01 73.6% 74.3%
4969387 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.53 41.0 2.82e-01 86.8% 76.3%
5068389 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.43e-01 80.2% 58.2%
4583708 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.53 43.0 3.20e-01 86.8% 88.4%
4944597 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.55e-01 76.9% 80.0%
4951664 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 47.0 3.99e-01 100.0% 84.7%
4107309 7504.1.1.1 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.52 41.0 3.11e-01 84.6% 64.7%
4952366 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.51 45.0 3.13e-01 100.0% 60.0%
3651439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.29e-01 87.9% 49.2%
4978131 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.51 45.0 3.24e-01 100.0% 59.3%
3609669 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.51 42.0 3.28e-01 90.1% 85.9%
3235095 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.50 37.0 2.82e-01 78.0% 77.0%
3795522 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.50 39.0 3.46e-01 84.6% 68.9%
D3 medium residues 99-190_291-340
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01609.28 best DDE_Tnp_1 44.9 1.70e-11 67.6% 51.5%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bcoA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 75.0 6.34e-01 99.3% 89.6%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.76 72.0 6.82e-01 99.3% 93.2%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.76 67.0 6.72e-01 96.5% 91.0%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.76 69.0 6.85e-01 96.5% 96.0%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 69.0 6.80e-01 99.3% 91.4%
7pikC01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 65.0 5.68e-01 95.1% 89.4%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 54.0 4.50e-01 85.2% 98.0%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.65 49.0 4.11e-01 79.6% 87.1%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.64 50.0 4.25e-01 81.0% 84.3%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.63 50.0 4.18e-01 83.1% 87.0%
2yhaA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 53.0 4.60e-01 95.1% 96.1%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.61 26.0 3.62e-01 93.7% 83.1%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.61 53.0 4.53e-01 95.1% 88.1%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 26.0 3.68e-01 90.8% 89.1%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.59 49.0 4.18e-01 89.4% 84.2%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 52.0 4.73e-01 97.9% 89.9%
4n5hX00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 40.0 3.13e-01 76.8% 70.5%
2yx6D01 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.54 35.0 4.06e-01 71.8% 92.2%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.52 26.0 3.21e-01 97.9% 76.5%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 31.0 3.49e-01 91.5% 79.2%
1sz2B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 37.0 3.98e-01 73.9% 88.3%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 27.0 3.17e-01 85.2% 72.2%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.50 31.0 3.55e-01 71.8% 82.2%
3c6aA00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 42.0 3.80e-01 91.5% 73.2%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 35.0 3.75e-01 73.2% 96.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009433 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.97 95.0 6.66e-01 100.0% 67.0%
4248295 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.97 95.0 6.78e-01 100.0% 71.0%
None 0.93 90.0 6.52e-01 100.0% 72.5%
3961876 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.93 90.0 6.43e-01 100.0% 69.4%
3957639 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.93 90.0 6.80e-01 100.0% 83.8%
4008870 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.88 85.0 5.93e-01 100.0% 61.3%
4977119 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.88 84.0 7.05e-01 100.0% 84.9%
4958315 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.88 84.0 6.35e-01 100.0% 63.3%
5027997 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.88 84.0 6.66e-01 100.0% 71.8%
5005291 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.88 84.0 7.08e-01 100.0% 81.8%
4992937 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.87 83.0 6.03e-01 100.0% 70.7%
5040335 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.87 83.0 7.15e-01 99.3% 89.3%
3949341 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 83.0 6.47e-01 100.0% 67.6%
4940124 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.87 83.0 6.25e-01 100.0% 61.1%
4932086 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.87 83.0 7.24e-01 100.0% 81.5%
5058150 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.86 82.0 6.44e-01 100.0% 67.0%
4966198 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.84 80.0 6.49e-01 100.0% 58.6%
4962044 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.84 80.0 6.30e-01 100.0% 61.9%
5006321 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.83 78.0 5.81e-01 100.0% 64.7%
4315503 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.83 78.0 5.68e-01 100.0% 62.0%
4954372 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.82 77.0 5.98e-01 100.0% 68.1%
2887749 2484.1.1.219 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.81 76.0 6.32e-01 99.3% 80.9%
4974444 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.81 78.0 6.12e-01 100.0% 62.3%
3976146 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 76.0 6.02e-01 98.6% 96.6%
5060820 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.81 76.0 5.17e-01 100.0% 65.7%
4010299 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 76.0 5.76e-01 100.0% 60.0%
3602926 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.80 74.0 7.45e-01 100.0% 95.8%
4933551 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.80 73.0 7.21e-01 100.0% 91.9%
11137 2484.1.1.33 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_2 0.80 75.0 6.42e-01 99.3% 92.6%
3983782 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.80 52.0 6.38e-01 73.9% 100.0%
4009918 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.79 75.0 5.81e-01 100.0% 88.4%
4599482 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.79 74.0 6.65e-01 99.3% 86.3%
4142588 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.79 56.0 5.07e-01 72.5% 68.6%
4952725 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.79 66.0 6.77e-01 100.0% 92.6%
5039061 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.78 70.0 6.00e-01 100.0% 62.9%
3943042 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.78 71.0 7.16e-01 97.2% 96.4%
3953103 2484.1.1.102 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.76 65.0 6.45e-01 98.6% 85.9%
4952918 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 46.0 5.72e-01 71.8% 97.8%
4929499 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.75 70.0 6.71e-01 100.0% 90.0%
3411713 2484.1.1.145 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.74 70.0 5.12e-01 100.0% 53.6%
3939024 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.74 69.0 5.89e-01 99.3% 67.7%
3504836 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.74 67.0 5.95e-01 99.3% 69.0%
4952913 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 68.0 6.26e-01 100.0% 88.9%
4122250 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 68.0 5.34e-01 100.0% 80.0%
4952348 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 67.0 5.97e-01 99.3% 95.3%
3547333 2484.1.1.104 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 0.72 65.0 5.65e-01 97.2% 90.5%
5019289 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 56.0 4.91e-01 81.7% 100.0%
4952496 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.71 66.0 6.44e-01 99.3% 98.7%
5017705 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 65.0 5.00e-01 96.5% 70.4%
4155925 2484.1.1.102 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.71 66.0 6.58e-01 100.0% 97.2%
3270453 2484.1.1.120 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.69 55.0 5.60e-01 83.8% 98.6%
3170080 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.69 45.0 5.39e-01 97.2% 98.9%
5031294 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.67 52.0 4.72e-01 80.3% 99.5%
4939753 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.66 34.0 3.66e-01 99.3% 56.7%
3926597 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.64 57.0 4.56e-01 97.9% 95.1%
3643562 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.64 51.0 4.23e-01 84.5% 84.0%
4955214 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.62 50.0 3.82e-01 86.6% 85.2%
5030701 2484.7.1.1 mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 0.61 54.0 4.61e-01 96.5% 87.4%
4970782 2484.7.1.1 mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 0.59 51.0 4.44e-01 95.1% 87.1%
5077971 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.54 37.0 4.08e-01 91.5% 86.1%
3507785 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 27.0 3.37e-01 95.1% 78.8%
5042784 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 38.0 4.11e-01 97.2% 90.8%
4662010 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 46.0 4.34e-01 99.3% 92.6%
5028530 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 26.0 3.14e-01 95.1% 73.3%
4972935 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 42.0 3.95e-01 91.5% 80.0%