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MK733259.1__QCW23391.1__X__00047

Bact-Vir

MK733259.1__QCW23391.1__X__00047

Identity

Accession:
MK733259 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.77 56.0 4.86e-01 81.2% 51.4%
3x3nA04 2.40.50.910 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Type VII secretion system EccB, repeat 3 domain 0.76 66.0 5.34e-01 100.0% 51.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 58.0 5.23e-01 85.4% 67.2%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 64.0 4.69e-01 97.9% 70.5%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 58.0 3.54e-01 91.7% 93.4%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 55.0 5.25e-01 87.5% 82.5%
4x9xA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.71 57.0 4.28e-01 89.6% 52.9%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.69 38.0 2.56e-01 95.8% 13.7%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 57.0 3.47e-01 93.8% 90.6%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 60.0 3.57e-01 100.0% 82.0%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.64 49.0 3.78e-01 85.4% 51.3%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.63 51.0 3.24e-01 91.7% 33.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.64e-01 91.7% 84.6%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 41.0 4.11e-01 77.1% 68.0%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.61 48.0 4.19e-01 97.9% 85.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 42.0 2.82e-01 75.0% 70.9%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 47.0 3.75e-01 91.7% 73.1%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.58 48.0 3.35e-01 97.9% 81.2%
1y2mD01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 46.0 3.04e-01 89.6% 73.6%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.58 40.0 3.07e-01 72.9% 59.0%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.78e-01 93.8% 50.1%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 45.0 3.56e-01 100.0% 41.2%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 51.0 3.24e-01 100.0% 34.4%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.06e-01 100.0% 29.0%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.57 44.0 3.29e-01 85.4% 49.2%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 40.0 3.66e-01 77.1% 61.2%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.02e-01 91.7% 90.8%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.55 44.0 2.69e-01 97.9% 19.0%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.21e-01 87.5% 55.9%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.07e-01 95.8% 92.6%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.29e-01 87.5% 61.3%
17gsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 42.0 3.40e-01 87.5% 77.8%
2f51A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 44.0 3.50e-01 97.9% 82.9%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.46e-01 89.6% 50.5%
3vtiA06 3.30.420.560 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 43.0 3.48e-01 93.8% 50.5%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 39.0 4.19e-01 81.2% 100.0%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 41.0 3.65e-01 91.7% 90.5%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 40.0 3.57e-01 85.4% 58.6%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 44.0 2.81e-01 100.0% 19.3%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 46.0 3.57e-01 100.0% 48.1%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.50 37.0 3.62e-01 87.5% 93.0%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 44.0 3.28e-01 100.0% 85.6%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 42.0 3.43e-01 100.0% 78.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959539 3708.1.1.0 a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains 0.79 68.0 6.57e-01 97.9% 86.8%
4935756 242.2.1.0 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.78 52.0 5.05e-01 75.0% 61.8%
4972215 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 63.0 4.05e-01 93.8% 22.9%
3286068 3708.1.1.1 a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.74 64.0 5.18e-01 95.8% 58.9%
4123857 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.73 48.0 5.22e-01 70.8% 82.5%
3907112 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.73 56.0 5.15e-01 87.5% 70.8%
3386489 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.72 63.0 4.33e-01 100.0% 37.6%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.70 54.0 3.70e-01 87.5% 25.4%
5051418 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 55.0 4.03e-01 89.6% 54.1%
3791186 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 50.0 4.40e-01 85.4% 58.7%
5074664 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 52.0 3.83e-01 87.5% 34.3%
3598286 2488.1.1.0 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot 0.67 55.0 3.73e-01 100.0% 81.0%
5048065 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 57.0 4.55e-01 100.0% 50.0%
3989004 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.65 52.0 3.21e-01 91.7% 14.2%
3837975 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 50.0 3.50e-01 87.5% 29.1%
2048178 244.2.1.10 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.64 50.0 4.54e-01 87.5% 65.2%
3600084 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 53.0 3.32e-01 95.8% 94.8%
3516025 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 50.0 3.98e-01 89.6% 53.3%
5051533 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 3.71e-01 85.4% 42.7%
3269508 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 3.71e-01 87.5% 43.5%
4278911 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.61 42.0 4.22e-01 81.2% 70.0%
5065765 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.61 50.0 3.43e-01 100.0% 61.8%
4112791 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 42.0 4.17e-01 81.2% 70.0%
5028212 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.60 49.0 3.55e-01 93.8% 97.3%
3227659 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.60 46.0 3.84e-01 87.5% 60.0%
5057849 210.1.1.0 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.60 49.0 3.31e-01 97.9% 55.6%
3282977 300.1.1.12 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.60 50.0 3.47e-01 100.0% 79.9%
3973778 3982.1.1.0 a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ 0.59 42.0 3.40e-01 77.1% 67.0%
4969199 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 45.0 3.55e-01 91.7% 81.5%
5000176 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 49.0 3.01e-01 97.9% 22.1%
3429387 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.58 41.0 4.18e-01 75.0% 86.7%
4962459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 3.75e-01 89.6% 58.0%
4015822 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.57 49.0 2.96e-01 100.0% 49.3%
3789569 376.1.1.32 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var 0.57 43.0 3.39e-01 87.5% 39.2%
3794522 2488.1.1.7 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.57 45.0 3.38e-01 100.0% 100.0%
4889754 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.57 38.0 3.67e-01 70.8% 56.7%
4943724 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 45.0 2.82e-01 100.0% 83.7%
3264176 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 44.0 3.36e-01 89.6% 51.2%
4965906 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 3.62e-01 97.9% 50.9%
3787887 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.56 43.0 3.92e-01 93.8% 64.4%
4065466 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.56 43.0 3.78e-01 91.7% 55.0%
2980418 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.56 44.0 2.98e-01 97.9% 38.6%
3743052 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.55 44.0 2.56e-01 87.5% 30.4%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.89e-01 81.2% 81.8%
3273029 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 48.0 3.06e-01 100.0% 42.7%
3269549 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.04e-01 91.7% 30.3%
5001238 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.20e-01 85.4% 37.3%
4956928 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 41.0 2.91e-01 95.8% 47.8%
4975819 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 44.0 2.93e-01 100.0% 31.1%
3907024 260.1.1.1 a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.53 44.0 2.65e-01 91.7% 13.8%
3789517 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 41.0 2.52e-01 95.8% 47.5%
3423399 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.53 38.0 3.15e-01 79.2% 87.4%
3716834 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.53 45.0 3.50e-01 95.8% 96.2%
5078886 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 46.0 3.55e-01 100.0% 89.1%
3629491 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 4.09e-01 93.8% 87.3%
3485727 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 44.0 3.63e-01 100.0% 55.8%
3783582 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.51 40.0 2.44e-01 100.0% 50.3%
3217019 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 42.0 3.24e-01 97.9% 77.5%
4995088 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.50 42.0 3.07e-01 100.0% 33.6%