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MK733260.1__QCW23454.1__X__00049
Bact-VirMK733260.1__QCW23454.1__X__00049
Identity
- Accession:
- MK733260 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-100
Domain cluster:
rep: IMGVR_UViG_3300021513_000102-3300021513-Ga0190315_10005481__D86-160
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13730.13 best | HTH_36 | 46.1 | 4.70e-12 | 55.1% | 85.5% |
D2
high
residues 161-262
Domain cluster:
rep: MN689509.1__QGT52595.1__CHPC1175_000249__00031__D298-376
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09524.16 best | Phg_2220_C | 77.1 | 1.20e-21 | 71.6% | 98.6% |
D3
high
residues 273-337
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.70 | 37.0 | 3.55e-01 | 95.4% | 44.6% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.67 | 48.0 | 4.36e-01 | 75.4% | 67.4% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 43.0 | 4.08e-01 | 70.8% | 56.4% |
| 3t4rA00 | 1.20.120.1590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 52.0 | 5.11e-01 | 87.7% | 93.1% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 49.0 | 4.04e-01 | 80.0% | 55.4% |
| 1eljA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.64 | 52.0 | 3.82e-01 | 92.3% | 71.1% |
| 3h74A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 50.0 | 3.27e-01 | 86.2% | 62.6% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.62 | 45.0 | 4.19e-01 | 78.5% | 61.7% |
| 3gwlA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.62 | 50.0 | 4.39e-01 | 95.4% | 74.5% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 47.0 | 4.53e-01 | 86.2% | 98.7% |
| 1zu4A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 53.0 | 4.86e-01 | 100.0% | 89.7% |
| 3buxB01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.59 | 46.0 | 3.69e-01 | 84.6% | 84.5% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.59 | 40.0 | 3.52e-01 | 70.8% | 48.0% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 52.0 | 3.99e-01 | 100.0% | 90.1% |
| 1xjaB00 | 2.60.120.280 | Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC | 0.59 | 49.0 | 3.77e-01 | 93.8% | 98.1% |
| 3hl6A02 | 1.20.58.700 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 49.0 | 4.10e-01 | 95.4% | 65.2% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 4.11e-01 | 83.1% | 71.8% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.58 | 47.0 | 4.13e-01 | 95.4% | 76.2% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 45.0 | 4.11e-01 | 84.6% | 70.9% |
| 7vevA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.57 | 47.0 | 3.23e-01 | 93.8% | 75.4% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.57 | 48.0 | 4.55e-01 | 93.8% | 93.8% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 47.0 | 3.92e-01 | 93.8% | 57.0% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.56 | 40.0 | 3.72e-01 | 76.9% | 66.3% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.56 | 43.0 | 4.52e-01 | 83.1% | 96.4% |
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.56 | 49.0 | 4.61e-01 | 100.0% | 81.5% |
| 2ba0A03 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 44.0 | 4.13e-01 | 90.8% | 72.3% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.55 | 46.0 | 3.67e-01 | 90.8% | 84.1% |
| 2hwjA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.54 | 41.0 | 4.25e-01 | 89.2% | 88.5% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.54 | 45.0 | 4.52e-01 | 93.8% | 93.9% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.53 | 42.0 | 3.12e-01 | 84.6% | 46.0% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 47.0 | 3.85e-01 | 100.0% | 80.5% |
| 2qsaA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 40.0 | 3.54e-01 | 86.2% | 95.0% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 44.0 | 4.00e-01 | 98.5% | 71.3% |
| 3i1aA03 | 1.20.58.840 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 45.0 | 3.70e-01 | 98.5% | 69.8% |
| 1ywmA02 | 1.20.1270.150 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein | 0.50 | 42.0 | 4.01e-01 | 95.4% | 88.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3816224 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.72 | 45.0 | 4.45e-01 | 98.5% | 58.6% |
| 4567807 | 397.7.1.6 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 | 0.72 | 49.0 | 4.99e-01 | 73.8% | 72.3% |
| 4258320 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.70 | 55.0 | 5.11e-01 | 83.1% | 85.0% |
| 3309440 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.70 | 65.0 | 4.83e-01 | 100.0% | 65.3% |
| 4453525 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.70 | 54.0 | 5.47e-01 | 83.1% | 81.5% |
| 3574087 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.68 | 51.0 | 4.35e-01 | 78.5% | 59.6% |
| 3491856 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.67 | 52.0 | 4.48e-01 | 100.0% | 55.8% |
| 3571483 | 60.1.1.16 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › MTBP_C | 0.67 | 53.0 | 4.99e-01 | 86.2% | 93.7% |
| 4107589 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.66 | 51.0 | 4.23e-01 | 84.6% | 60.9% |
| 3879341 | 142.3.1.2 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › MTBP_C | 0.66 | 52.0 | 4.89e-01 | 86.2% | 90.0% |
| 3889356 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.63 | 48.0 | 3.23e-01 | 81.5% | 28.0% |
| 3338341 | 601.42.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain › At4g04980_N | 0.60 | 53.0 | 4.30e-01 | 100.0% | 94.4% |
| 4957991 | 181.1.1.33 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SMC_ScpA | 0.59 | 43.0 | 4.10e-01 | 80.0% | 98.8% |
| 3592779 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 48.0 | 4.33e-01 | 92.3% | 65.6% |
| 4972788 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.58 | 51.0 | 4.26e-01 | 98.5% | 77.3% |
| 3584608 | 3660.1.1.3 ↗ | alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › OPA1_C | 0.57 | 41.0 | 3.48e-01 | 75.4% | 60.0% |
| 3634546 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.57 | 48.0 | 4.64e-01 | 93.8% | 92.0% |
| 4932281 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.55 | 45.0 | 3.96e-01 | 90.8% | 60.0% |
| 3972662 | 5102.1.1.1 ↗ | alpha arrays › C-terminal helical domain in Atu1540-like proteins › C-terminal helical domain in Atu1540-like proteins › C-terminal helical domain in Atu1540-like proteins › ParBc_2 | 0.55 | 41.0 | 3.50e-01 | 81.5% | 59.1% |
| 3743679 | 101.1.1.148 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › EPL1 | 0.55 | 44.0 | 3.76e-01 | 87.7% | 94.3% |
| 3691996 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.54 | 45.0 | 4.12e-01 | 95.4% | 80.0% |
| 4464616 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.54 | 45.0 | 4.09e-01 | 93.8% | 81.1% |
| 4929008 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.53 | 44.0 | 3.53e-01 | 96.9% | 44.3% |
| 3954445 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.53 | 39.0 | 3.36e-01 | 80.0% | 97.1% |
| 3800176 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 42.0 | 3.78e-01 | 84.6% | 94.1% |
| 3464600 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.51 | 44.0 | 2.97e-01 | 96.9% | 30.2% |