←Back to structures

MK733261.1__QCW23503.1__X__00035

Bact-Vir

MK733261.1__QCW23503.1__X__00035

Identity

Accession:
MK733261 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_YeP3

TaxID: 2562811

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-67
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.57 39.0 3.15e-01 73.3% 72.0%
7zn6A01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 37.0 2.52e-01 75.0% 76.7%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.83e-01 95.0% 86.3%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.50 34.0 2.70e-01 73.3% 63.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737642 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 36.0 3.03e-01 71.7% 38.3%
3740154 1100.1.1.1 ↗ beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.52 35.0 2.37e-01 90.0% 17.1%
5045455 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 35.0 2.78e-01 73.3% 67.4%
5018391 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 35.0 2.71e-01 73.3% 64.8%
D2 medium residues 73-126
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4874187 3051.1.1.1 ↗ alpha arrays › Superantigen MAM C-terminal domain › Superantigen MAM C-terminal domain › Superantigen MAM C-terminal domain › MA-Mit 0.66 51.0 3.91e-01 81.5% 70.6%
D3 medium residues 127-200
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.68 54.0 4.35e-01 85.1% 47.1%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.65 49.0 4.00e-01 83.8% 47.6%
3d8uB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 38.0 3.24e-01 70.3% 36.7%
1ihuA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 48.0 3.38e-01 85.1% 41.2%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 44.0 4.42e-01 77.0% 82.1%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.61 43.0 4.46e-01 74.3% 92.9%
1kgdA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 41.0 3.64e-01 81.1% 47.0%
4ee9A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 47.0 3.06e-01 86.5% 30.5%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 40.0 4.26e-01 71.6% 100.0%
4fxxB01 6.10.140.1790 Special › Helix non-globular › Helix Hairpins › 0.57 39.0 3.98e-01 70.3% 87.5%
1r1mA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.57 40.0 3.31e-01 79.7% 39.3%
4i1sA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 39.0 3.33e-01 73.0% 80.2%
1sqpF00 1.10.1090.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain F › Cytochrome b-c1 complex subunit 7 0.55 38.0 3.36e-01 70.3% 69.5%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 3.14e-01 79.7% 56.7%
1g0hA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.54 36.0 3.04e-01 70.3% 86.1%
1p5hA01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.53 37.0 2.40e-01 73.0% 58.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4561209 7510.1.1.0 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.70 51.0 4.13e-01 75.7% 41.5%
1293726 150.7.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE 0.68 50.0 4.78e-01 78.4% 76.5%
4019020 7579.1.1.51 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF676 0.65 46.0 3.07e-01 73.0% 50.4%
4016854 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 47.0 2.80e-01 77.0% 41.9%
3799245 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 54.0 3.58e-01 100.0% 39.4%
4021356 7585.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.59 41.0 2.93e-01 73.0% 92.5%
3617793 109.4.1.2466 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fab1_bd, ECM29_N, HEAT_ECM29 0.53 45.0 2.50e-01 98.6% 18.9%
4021257 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 38.0 2.58e-01 77.0% 46.8%