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MK733264.1__QCW23589.1__X__00020

Bact-Vir

MK733264.1__QCW23589.1__X__00020

Identity

Accession:
MK733264 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_YeP6

TaxID: 2562814

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-91
PDB
Domain cluster: rep: MN746332.1__QNH91656.1__SR18_gp005c__00005__D13-91
D2 high residues 92-216
PDB
Domain cluster: rep: IMGVR_UViG_3300009647_000327-3300009647-Ga0123326_10058846__D83-238
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09250.17 best Prim-Pol 24.5 4.70e-05 88.8% 62.0%
D3 high residues 235-308
PDB
Domain cluster: rep: MN592897.1__QGT52237.1__X__00012__D230-312
D4 high residues 343-420
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.74 48.0 4.67e-01 84.6% 60.5%
1tafB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 39.0 4.07e-01 75.6% 61.4%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.63 37.0 3.86e-01 80.8% 60.8%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 31.0 4.03e-01 76.9% 90.5%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.61 48.0 4.83e-01 100.0% 84.0%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 44.0 2.99e-01 78.2% 45.6%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 43.0 4.66e-01 97.4% 95.2%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 32.0 3.99e-01 80.8% 89.1%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.59 46.0 4.54e-01 100.0% 80.5%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 41.0 4.17e-01 100.0% 77.3%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.56 41.0 3.89e-01 98.7% 64.9%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.55 36.0 3.45e-01 96.2% 56.5%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 40.0 3.21e-01 82.1% 81.3%
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 31.0 3.41e-01 82.1% 72.4%
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.54 33.0 3.19e-01 87.2% 52.7%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.54 35.0 3.30e-01 100.0% 54.8%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 39.0 3.55e-01 79.5% 61.5%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.53 38.0 3.91e-01 89.7% 82.2%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 4.13e-01 98.7% 93.9%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.52 45.0 4.12e-01 97.4% 97.1%
1oqcA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.52 38.0 3.43e-01 79.5% 86.6%
6o15A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 36.0 2.60e-01 74.4% 74.7%
1ri5A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 2.97e-01 94.9% 96.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715143 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 48.0 4.84e-01 98.7% 72.5%
5084004 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.67 46.0 3.50e-01 94.9% 28.7%
4945511 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.65 44.0 3.40e-01 91.0% 30.0%
4183840 212.1.1.4 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N,GalKase_gal_bdg 0.64 44.0 3.29e-01 94.9% 28.0%
3672413 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 5.21e-01 100.0% 82.2%
3455132 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.62 56.0 4.86e-01 100.0% 98.3%
5044854 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.62 42.0 3.21e-01 94.9% 28.0%
4520559 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.62 49.0 4.83e-01 100.0% 80.0%
143247 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.61 49.0 4.83e-01 100.0% 82.9%
3245970 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.61 48.0 4.19e-01 98.7% 56.7%
3400892 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.61 33.0 4.06e-01 88.5% 100.0%
4067487 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.60 37.0 3.51e-01 96.2% 51.6%
3224656 101.1.1.102 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.60 53.0 4.73e-01 100.0% 89.1%
3311239 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.59 53.0 4.55e-01 100.0% 96.8%
3432362 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.59 53.0 4.53e-01 100.0% 99.2%
4168230 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.58 36.0 3.44e-01 96.2% 51.6%
4343474 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.58 36.0 3.43e-01 96.2% 51.6%
3442297 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.58 51.0 5.01e-01 100.0% 98.8%
3459400 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.58 51.0 4.45e-01 100.0% 100.0%
3289657 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.57 37.0 3.64e-01 100.0% 61.2%
3284530 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.57 35.0 3.36e-01 96.2% 51.6%
3960596 245.2.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.57 35.0 3.47e-01 96.2% 57.6%
3604752 245.2.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.56 36.0 3.01e-01 100.0% 35.9%
4504596 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.56 34.0 3.33e-01 96.2% 53.3%
3605636 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.55 37.0 4.29e-01 79.5% 98.2%
3589881 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.55 34.0 3.21e-01 89.7% 50.5%
3715229 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.55 37.0 4.27e-01 73.1% 98.2%
3273157 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 40.0 2.53e-01 96.2% 14.9%
4567436 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.54 36.0 3.54e-01 92.3% 62.4%
3624872 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.54 46.0 3.84e-01 100.0% 80.0%
4946979 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.54 44.0 3.43e-01 91.0% 86.3%
4124819 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.54 33.0 3.26e-01 87.2% 56.5%
5079543 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.54 46.0 3.45e-01 100.0% 41.9%
3279757 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.53 35.0 3.47e-01 96.2% 62.4%
4472467 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.53 33.0 3.29e-01 91.0% 57.6%
3999372 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.53 45.0 3.96e-01 100.0% 82.4%
4498285 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.53 35.0 3.33e-01 92.3% 55.8%
3703118 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.53 34.0 3.24e-01 96.2% 52.0%
4194016 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.52 35.0 3.75e-01 92.3% 81.5%
3285183 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.52 44.0 3.09e-01 97.4% 85.5%
3251763 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.51 36.0 2.36e-01 75.6% 39.4%
D5 high residues 643-720
PDB
Domain cluster: rep: IMGVR_UViG_3300014039_000036-3300014039-Ga0116646_100011759__D492-571
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 5.27e-01 100.0% 83.1%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.79e-01 100.0% 61.9%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.62e-01 100.0% 62.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 3.99e-01 100.0% 39.9%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.58e-01 100.0% 62.2%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.67 56.0 5.56e-01 100.0% 88.9%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.84e-01 100.0% 64.8%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 4.95e-01 100.0% 75.3%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.13e-01 98.7% 44.4%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.48e-01 100.0% 59.8%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.12e-01 98.7% 44.4%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.47e-01 100.0% 59.6%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.22e-01 98.7% 46.8%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.64e-01 100.0% 68.9%
3htuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.38e-01 100.0% 94.7%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.85e-01 100.0% 71.9%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.92e-01 100.0% 84.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.70e-01 100.0% 67.0%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.38e-01 100.0% 62.1%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.65e-01 100.0% 68.0%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.14e-01 100.0% 55.4%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 5.16e-01 100.0% 88.9%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.41e-01 100.0% 65.0%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.53e-01 100.0% 66.7%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.42e-01 100.0% 61.7%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.26e-01 100.0% 59.8%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.60 34.0 3.12e-01 71.8% 40.6%
1i27A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.55e-01 96.2% 86.3%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 4.49e-01 74.4% 98.2%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.77e-01 100.0% 88.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.44e-01 100.0% 77.5%
2ch0A01 1.10.10.1180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain 0.58 50.0 4.71e-01 100.0% 81.6%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.00e-01 100.0% 66.7%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 50.0 4.88e-01 100.0% 97.6%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 47.0 4.74e-01 100.0% 95.0%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.56 41.0 4.30e-01 100.0% 87.1%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 40.0 4.29e-01 100.0% 92.5%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.14e-01 100.0% 80.2%
4b09B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.11e-01 100.0% 73.5%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.53 39.0 4.04e-01 100.0% 83.6%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.02e-01 100.0% 66.7%
7zp0A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 43.0 3.56e-01 91.0% 99.3%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.53 40.0 3.20e-01 83.3% 79.5%
3p26A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.16e-01 91.0% 43.7%
6lgqC01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 41.0 3.52e-01 87.2% 99.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.84e-01 100.0% 62.5%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.52 44.0 4.14e-01 92.3% 79.8%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 39.0 3.35e-01 79.5% 69.6%
4fppA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 43.0 3.61e-01 92.3% 98.5%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 43.0 3.36e-01 89.7% 54.2%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.12e-01 100.0% 86.0%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 41.0 3.03e-01 98.7% 31.5%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.51 44.0 3.10e-01 100.0% 51.6%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.27e-01 92.3% 85.3%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 41.0 2.96e-01 98.7% 30.1%
4kp4A02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 43.0 3.56e-01 97.4% 96.6%
3ocjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 41.0 2.86e-01 92.3% 60.3%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.32e-01 87.2% 63.5%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.50 38.0 3.40e-01 100.0% 57.7%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3205132 101.1.2.533 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_CYT4 0.71 59.0 5.55e-01 100.0% 73.7%
3602557 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.71 54.0 5.15e-01 100.0% 71.1%
5014384 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.69 54.0 4.79e-01 100.0% 58.3%
1146763 101.1.2.72 ↗ alpha arrays › HTH › HTH › winged helix domain › Sulfolobus_pRN 0.69 52.0 5.27e-01 100.0% 83.1%
4946524 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 4.63e-01 100.0% 57.3%
4928190 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.67 51.0 5.02e-01 98.7% 76.2%
5077919 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.67 50.0 4.66e-01 100.0% 63.0%
4022000 101.1.2.79 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.67 52.0 5.43e-01 100.0% 92.9%
3960673 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 51.0 5.48e-01 98.7% 100.0%
4948012 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 50.0 4.52e-01 100.0% 56.5%
3347818 101.1.2.529 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.67 55.0 5.61e-01 100.0% 96.0%
5042730 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.66 49.0 4.83e-01 100.0% 74.1%
4028966 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 4.86e-01 100.0% 72.2%
5048761 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 49.0 5.08e-01 100.0% 90.0%
5003621 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.29e-01 100.0% 76.8%
5008107 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.66 49.0 4.49e-01 100.0% 60.0%
3924273 101.1.2.75 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_alpha 0.66 51.0 5.24e-01 100.0% 90.4%
3988732 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 52.0 4.70e-01 100.0% 63.0%
3820802 101.1.2.529 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.66 56.0 5.02e-01 100.0% 68.2%
2409292 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 52.0 4.78e-01 100.0% 66.3%
4964272 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.39e-01 100.0% 60.0%
5064203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.70e-01 100.0% 72.2%
3573598 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.64 52.0 4.75e-01 100.0% 65.5%
4991498 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 5.28e-01 100.0% 98.6%
5031473 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 50.0 4.62e-01 100.0% 64.8%
5052474 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 50.0 4.59e-01 100.0% 63.8%
1299892 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.64 51.0 4.57e-01 100.0% 61.4%
3587554 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 49.0 4.55e-01 100.0% 66.0%
3932128 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 4.49e-01 100.0% 54.3%
5071269 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 53.0 3.92e-01 100.0% 34.8%
4998663 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 4.68e-01 98.7% 58.5%
3737595 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.63 55.0 3.89e-01 100.0% 36.1%
3319155 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.62 54.0 3.76e-01 100.0% 28.6%
3623882 101.1.2.75 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIF_alpha 0.62 48.0 5.05e-01 100.0% 95.7%
3938065 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 5.08e-01 100.0% 94.7%
3483771 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.61 51.0 4.80e-01 100.0% 77.9%
3407611 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 44.0 4.47e-01 100.0% 78.7%
5045911 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 53.0 4.85e-01 100.0% 75.2%
4983426 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 4.68e-01 100.0% 85.0%
3830360 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 39.0 2.30e-01 96.2% 8.3%
3271317 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.60 43.0 4.05e-01 100.0% 62.1%
3395407 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.59 43.0 4.22e-01 100.0% 70.6%
3357806 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.59 42.0 4.57e-01 100.0% 90.8%
3698585 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.59 42.0 4.26e-01 100.0% 75.0%
3594005 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 3.82e-01 100.0% 43.0%
3606618 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.58 44.0 4.23e-01 100.0% 70.0%
3581967 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.58 43.0 4.58e-01 100.0% 93.8%
3694234 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.58 49.0 3.90e-01 100.0% 45.3%
4994660 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.47e-01 100.0% 74.5%
4953964 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 49.0 4.43e-01 100.0% 71.8%
3810002 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.57 48.0 4.41e-01 100.0% 70.0%
3552466 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.57 42.0 4.46e-01 100.0% 88.6%
4019210 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.57 44.0 4.61e-01 100.0% 92.9%
153276 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.56 41.0 4.30e-01 100.0% 87.1%
3550851 101.1.2.86 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.55 48.0 4.70e-01 100.0% 92.9%
4143892 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.55 49.0 3.53e-01 100.0% 91.1%
5036673 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.55 49.0 3.55e-01 100.0% 90.9%
3579467 304.151.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › PF25899 0.55 37.0 3.18e-01 70.5% 64.8%
3785490 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.54 47.0 3.87e-01 100.0% 54.7%
4228350 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.54 39.0 4.24e-01 100.0% 93.8%
3250910 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.54 42.0 4.46e-01 100.0% 95.7%
3516321 4012.4.1.1 ↗ a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain › DPAGT1_ins 0.54 30.0 3.64e-01 73.1% 93.3%
4938255 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 40.0 3.97e-01 98.7% 76.2%
3785947 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.52 45.0 3.94e-01 100.0% 72.8%
3471082 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 42.0 3.76e-01 98.7% 63.3%
3589868 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 45.0 3.68e-01 100.0% 97.3%
3235889 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 45.0 3.21e-01 100.0% 31.5%
3940062 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 42.0 2.88e-01 93.6% 66.3%
3883263 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 43.0 3.27e-01 98.7% 36.6%
3357930 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 42.0 4.29e-01 100.0% 93.3%
3494759 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.92e-01 100.0% 78.3%
5014006 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.51 37.0 3.60e-01 76.9% 91.8%
5007985 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 43.0 3.63e-01 98.7% 95.8%
3987424 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 42.0 3.55e-01 96.2% 100.0%
D6 medium residues 439-502_590-631
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05272.18 best VapE-like_dom 55.9 6.10e-15 61.3% 27.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033843 2004.1.1.313 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom 0.90 72.0 5.69e-01 83.0% 91.3%
D7 medium residues 503-589
PDB
Domain cluster: rep: MT366568.1__QJT70689.1__X__00061__D1-71
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05272.18 best VapE-like_dom 90.7 1.30e-25 100.0% 36.9%