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MK737942.1__QCQ57474.1__SEA_SUCHA_29__00029

Bact-Vir

MK737942.1__QCQ57474.1__SEA_SUCHA_29__00029

Identity

Accession:
MK737942 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Goodmanvirus› Microbacterium_phage_Sucha

TaxID: 2565527

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-56
PDB
Domain cluster: rep: GQ403788.1__ADD25732.1__X__00035__D4-63
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3purA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 46.0 4.02e-01 100.0% 52.7%
2h0rA00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.59 42.0 2.83e-01 76.0% 99.1%
6whpA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.59 43.0 2.73e-01 80.0% 30.3%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.57 43.0 3.08e-01 100.0% 25.6%
4r2qA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 34.0 2.92e-01 100.0% 33.0%
3qa8G02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 40.0 3.64e-01 82.0% 91.1%
2k5cA00 3.10.20.830 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bifunctional heparan sulphate n-deacetylase/n-sulphotransferase 0.56 38.0 3.28e-01 72.0% 72.7%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.56 41.0 3.59e-01 82.0% 92.8%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.53 45.0 2.97e-01 100.0% 48.3%
5dkaA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 34.0 2.84e-01 94.0% 34.4%
1a9nD00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 42.0 3.47e-01 90.0% 61.3%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.52 38.0 3.40e-01 82.0% 63.4%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.86e-01 98.0% 89.0%
2f9jA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 37.0 3.27e-01 82.0% 68.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3480673 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.74 55.0 5.59e-01 98.0% 82.0%
3304094 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 47.0 5.24e-01 94.0% 100.0%
5071927 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 48.0 4.73e-01 100.0% 70.9%
3538555 386.1.1.108 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_2 0.66 41.0 3.86e-01 98.0% 51.7%
3854053 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 38.0 3.22e-01 98.0% 35.3%
3399453 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.61 37.0 3.38e-01 98.0% 42.9%
1840977 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.60 42.0 2.75e-01 72.0% 36.3%
3496590 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 37.0 3.55e-01 98.0% 51.7%
5001364 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 3.97e-01 92.0% 72.2%
3795441 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 35.0 3.34e-01 100.0% 48.3%
3273984 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 41.0 3.55e-01 82.0% 67.1%
3598956 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 37.0 3.27e-01 100.0% 43.8%
5006819 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.55 46.0 3.77e-01 94.0% 61.1%
4011979 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.37e-01 92.0% 46.4%
3928125 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.53 38.0 3.80e-01 82.0% 85.5%
3718990 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 37.0 2.72e-01 78.0% 76.4%
3173222 4075.1.1.0 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain 0.53 35.0 2.77e-01 70.0% 43.5%
3305375 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.53 40.0 3.72e-01 92.0% 64.3%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.52 44.0 4.03e-01 100.0% 87.1%
4975439 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.55e-01 92.0% 64.7%
3711556 304.9.1.136 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › CBP66_1st 0.50 40.0 3.30e-01 90.0% 77.9%