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MK764437.1__QCW20037.1__X__00031

Bact-Vir

MK764437.1__QCW20037.1__X__00031

Identity

Accession:
MK764437 ↗
Kingdom:
phage

Quality

96.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-91
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 47.0 3.59e-01 89.8% 30.1%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 50.0 3.81e-01 88.1% 34.5%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.65 52.0 3.52e-01 96.6% 22.0%
4dj3B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 43.0 3.58e-01 84.7% 38.7%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 3.59e-01 84.7% 35.3%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 42.0 3.45e-01 81.4% 36.8%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.57e-01 89.8% 39.5%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 42.0 3.58e-01 94.9% 43.4%
7s7rA01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 46.0 3.55e-01 84.7% 67.9%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.59e-01 84.7% 38.9%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 48.0 3.94e-01 89.8% 63.1%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.59 49.0 3.42e-01 98.3% 52.8%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.59 43.0 2.91e-01 79.7% 67.4%
3h95A02 4.10.80.100 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.58 30.0 3.83e-01 72.9% 93.3%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 47.0 3.02e-01 96.6% 78.3%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 50.0 3.77e-01 100.0% 41.1%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.56 38.0 3.99e-01 100.0% 81.1%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 41.0 3.11e-01 81.4% 93.2%
1jpyX00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.56 39.0 3.17e-01 74.6% 47.0%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 45.0 4.03e-01 91.5% 79.3%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 47.0 3.92e-01 98.3% 58.7%
2rhqB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 44.0 3.08e-01 89.8% 58.3%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.55 45.0 3.58e-01 98.3% 83.1%
3ek7A01 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 44.0 3.04e-01 96.6% 63.2%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.54 41.0 3.14e-01 88.1% 51.9%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 42.0 3.22e-01 93.2% 66.9%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 39.0 2.50e-01 79.7% 52.4%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 40.0 3.90e-01 96.6% 73.8%
7b1cD01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 38.0 3.38e-01 76.3% 59.1%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 39.0 3.95e-01 96.6% 82.5%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.53 43.0 3.50e-01 93.2% 49.2%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.25e-01 94.9% 44.7%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.53 40.0 3.23e-01 86.4% 87.7%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.97e-01 96.6% 96.5%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 42.0 3.27e-01 91.5% 47.9%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.72e-01 96.6% 99.0%
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 38.0 2.67e-01 84.7% 79.8%
1rxtC02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 46.0 3.25e-01 100.0% 52.3%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 40.0 2.65e-01 91.5% 30.3%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 45.0 3.69e-01 100.0% 80.5%
7by6B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 42.0 2.86e-01 93.2% 56.7%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.52 41.0 2.96e-01 91.5% 72.6%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.51 44.0 3.79e-01 98.3% 69.5%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.50 42.0 3.31e-01 100.0% 53.1%
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 37.0 2.57e-01 84.7% 44.8%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3783432 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.75 58.0 4.77e-01 84.7% 95.2%
3403156 11.2.1.95 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2, CC2D2AN-C2 0.74 61.0 3.73e-01 93.2% 27.2%
4958145 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.72 51.0 3.31e-01 88.1% 17.3%
4506892 223.1.1.44 a+b three layers › Profilin-like › sensor domains › sensor domains › Per3-like_PAS-A 0.70 53.0 4.23e-01 83.1% 45.8%
3788285 395.1.1.4 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.69 50.0 5.25e-01 89.8% 92.0%
3489971 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 55.0 4.43e-01 89.8% 45.8%
3251381 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.67 48.0 4.67e-01 94.9% 69.2%
3702318 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.67 57.0 3.86e-01 98.3% 46.1%
3575242 1.1.1.14 beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.66 48.0 4.25e-01 78.0% 52.9%
5029482 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 49.0 4.49e-01 91.5% 60.0%
4051041 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.66 48.0 3.59e-01 79.7% 30.3%
4464235 295.1.1.30 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Cyto_heme_lyase 0.66 55.0 3.99e-01 96.6% 43.8%
3503098 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.65 47.0 4.06e-01 84.7% 48.4%
3595817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 55.0 4.60e-01 100.0% 81.8%
3309384 9.13.1.1 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.65 50.0 4.04e-01 98.3% 42.9%
4962934 331.2.1.15 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 0.64 54.0 4.04e-01 98.3% 57.5%
4222482 385.1.1.0 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.63 43.0 3.82e-01 72.9% 52.2%
3939294 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 50.0 3.05e-01 89.8% 23.9%
4023152 5.1.5.115 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR3_2nd 0.62 49.0 3.07e-01 88.1% 22.6%
3959285 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 44.0 3.94e-01 81.4% 52.4%
4943531 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 46.0 3.77e-01 89.8% 41.7%
3193892 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 48.0 2.67e-01 88.1% 8.1%
3402269 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.61 53.0 4.38e-01 100.0% 60.0%
4022336 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 51.0 3.09e-01 93.2% 25.7%
4844428 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.60 42.0 3.93e-01 94.9% 58.7%
4985264 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.60 51.0 3.96e-01 96.6% 83.7%
4642761 331.22.1.2 a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.59 49.0 3.44e-01 96.6% 33.8%
4172289 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.59 49.0 3.98e-01 94.9% 89.2%
4236774 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.59 50.0 3.98e-01 96.6% 90.4%
3698353 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 40.0 3.30e-01 81.4% 35.2%
3728676 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 52.0 3.46e-01 100.0% 35.3%
3555586 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.58 46.0 3.89e-01 91.5% 52.6%
4159896 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.58 46.0 2.89e-01 94.9% 83.8%
4133928 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.58 49.0 3.95e-01 96.6% 90.8%
4945859 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.58 49.0 3.86e-01 96.6% 86.2%
4600806 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.58 51.0 4.16e-01 100.0% 53.6%
3787952 213.1.1.29 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.58 49.0 3.55e-01 98.3% 50.6%
5043905 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.58 50.0 3.40e-01 100.0% 80.0%
3505108 385.1.1.11 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › IL17 0.58 41.0 3.50e-01 93.2% 47.3%
4232994 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.57 49.0 4.02e-01 96.6% 89.1%
3205034 331.3.1.30 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.57 48.0 3.15e-01 100.0% 34.0%
4943803 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.57 47.0 3.16e-01 98.3% 43.0%
4354607 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.57 47.0 3.83e-01 96.6% 90.8%
3517335 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 43.0 3.65e-01 96.6% 46.1%
4629438 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.57 45.0 3.85e-01 96.6% 91.8%
3647546 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.56 43.0 4.40e-01 94.9% 90.9%
4101594 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.56 47.0 3.80e-01 96.6% 90.8%
3980299 327.6.1.6 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin 0.56 39.0 2.70e-01 76.3% 57.8%
4025160 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 48.0 3.85e-01 100.0% 76.0%
3640057 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.56 43.0 3.11e-01 93.2% 72.6%
4120121 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.56 44.0 3.77e-01 96.6% 91.8%
4248693 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 47.0 3.37e-01 98.3% 42.7%
4484391 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.55 43.0 3.60e-01 96.6% 80.8%
4987319 1036.1.1.2 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 0.54 36.0 3.11e-01 100.0% 38.2%
3282895 912.1.1.0 few secondary structure elements › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain 0.54 46.0 3.28e-01 100.0% 77.9%
4119784 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.54 43.0 3.57e-01 96.6% 84.7%
135591 265.1.1.4 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › PhiCb5_coat 0.53 43.0 3.50e-01 93.2% 49.2%
381191 2.1.1.122 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.53 38.0 3.25e-01 94.9% 44.7%
4488222 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 42.0 3.42e-01 96.6% 80.8%
3201954 4096.1.1.0 a+b two layers › NAP-like › NAP-like › NAP-like 0.52 43.0 2.85e-01 94.9% 35.0%
3703275 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 44.0 3.58e-01 96.6% 95.7%
3534592 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.69e-01 88.1% 80.0%
3593966 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.51 44.0 3.05e-01 96.6% 66.7%
5044559 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 41.0 3.74e-01 89.8% 78.8%
4978573 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.51 45.0 3.43e-01 100.0% 76.3%
4196358 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.51 41.0 3.39e-01 96.6% 89.2%
4955607 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.50 42.0 2.95e-01 100.0% 81.9%
4437448 7026.1.1.5 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.50 41.0 2.87e-01 100.0% 40.8%